RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 PEX5P50542 639 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 GSCP56915 257 aaPredicted RBP9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 GUCY2DQ02846 1103 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 TRPC3Q13507 836 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 DGKZQ13574 1117 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 NCOA4Q13772 614 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 CAPSQ13938 189 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 PLCB4Q15147 1175 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 ZNF792Q3KQV3 632 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 GPAT2Q6NUI2 795 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 GJB7Q6PEY0 223 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 CRELD2Q6UXH1 353 aaPredicted RBP9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 LEKR1Q6ZMV7 388 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 SPATS2Q86XZ4 545 aaKnown RBP9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 MCOLN2Q8IZK6 566 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 IQCKQ8N0W5 287 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 TMEM35BQ8NCS4 154 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 PLEKHO2Q8TD55 490 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 AFG1LQ8WV93 481 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 CD101Q93033 1021 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 SAAL1Q96ER3 474 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 PCYT2Q99447 389 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 KRT12Q99456 494 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 ERP44Q9BS26 406 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 TCHPQ9BT92 498 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 NIF3L1Q9GZT8 377 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 FAM107BQ9H098 131 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 LRRC19Q9H756 370 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 PTPRHQ9HD43 1115 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 CALCOCO1Q9P1Z2 691 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 IP6K2Q9UHH9 426 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 DMGDHQ9UI17 866 aaKnown RBP9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 WDR81Q562E7 1941 aa9.31□□□□□ -0.92
SNRNP40-202ENST00000373720 GOLGA8IPA6NC78 632 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 SLC15A5A6NIM6 579 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 GOLGA8JA6NMD2 632 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 TK2O00142 265 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 FSCN2O14926 492 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 NCK2O43639 380 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 SPOPO43791 374 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 SGPL1O95470 568 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 FGGP02679 453 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 ABCB4P21439 1286 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 ZNF132P52740 706 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 NOP14P78316 857 aaKnown RBP9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 DR1Q01658 176 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 PIGHQ14442 188 aaPredicted RBP9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 FAM110CQ1W6H9 321 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 DCAF4L1Q3SXM0 396 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 ATF7IP2Q5U623 682 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 PRAMEF18Q5VWM3 479 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 PLEKHA7Q6IQ23 1121 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 SND1Q7KZF4 910 aaKnown RBP eCLIP9.3□□□□□ -0.926e-6■□□□□ 9.2
SNRNP40-202ENST00000373720 SLC47A2Q86VL8 602 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 RHOT1Q8IXI2 618 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 C3orf20Q8ND61 904 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 FAM76AQ8TAV0 307 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 ASAP3Q8TDY4 903 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 FNIP1Q8TF40 1166 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 SEMA4DQ92854 862 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 TMEM143Q96AN5 459 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 ZNF653Q96CK0 615 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 RBM41Q96IZ5 413 aaKnown RBP9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 ADPGKQ9BRR6 497 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 PAGR1Q9BTK6 254 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 NUP85Q9BW27 656 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 PHACTR1Q9C0D0 580 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 EPC1Q9H2F5 836 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 BCAS3Q9H6U6 928 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 IFT122Q9HBG6 1241 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 POLD4Q9HCU8 107 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 DDX56Q9NY93 547 aaKnown RBP9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 CNOT8Q9UFF9 292 aaKnown RBP9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 AJAP1Q9UKB5 411 aaPredicted RBP9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 C2CD2Q9Y426 696 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 MYH10P35580 1976 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 PASKQ96RG2 1323 aa9.3□□□□□ -0.92
SNRNP40-202ENST00000373720 GOLGA6CA6NDK9 693 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 ADM5C9JUS6 153 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 FAM189A1O60320 539 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 KPNA6O60684 536 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 PROSCO94903 275 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 GAS8O95995 478 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 GLI1P08151 1106 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 TMEM191BP0C7N4 346 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 GOLGA6DP0CG33 693 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 KRT5P13647 590 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 ITIH2P19823 946 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 ACO1P21399 889 aaKnown RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 PAX3P23760 479 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 GNA15P30679 374 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 PTPN7P35236 360 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 NLRP11P59045 1033 aaKnown RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 DUSP28Q4G0W2 176 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 TDRD10Q5VZ19 366 aaKnown RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 DRICH1Q6PGQ1 229 aaPredicted RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 ZNF771Q7L3S4 317 aaPredicted RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 POLNQ7Z5Q5 900 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 KATNAL2Q8IYT4 538 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 NME8Q8N427 588 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms