RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 SCYL1Q96KG9 808 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 DEFB118Q96PH6 123 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 SEPT5Q99719 369 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 MSTO1Q9BUK6 570 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ERAP1Q9NZ08 941 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 TRPM5Q9NZQ8 1165 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 KDM6AO15550 1401 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 RPAP1Q9BWH6 1393 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 KDM4FA0A1W2PPD8 638 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 FGF19O95750 216 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 ERVK-10P10266 1014 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PAMP19021 973 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NSFP46459 744 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PRKAA1Q13131 559 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PPP2R2DQ66LE6 453 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 TYW1BQ6NUM6 668 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 XRRA1Q6P2D8 792 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 KRT74Q7RTS7 529 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 RSPH1Q8WYR4 309 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 LGR6Q9HBX8 967 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NLRC4Q9NPP4 1024 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 UBN2Q6ZU65 1347 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 POTECB2RU33 542 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 KLHL41O60662 606 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 SEC31AO94979 1220 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 MYL1P05976 194 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NCAPHQ15003 741 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 FAM83BQ5T0W9 1011 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 KDELC2Q7Z4H8 507 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NLRP10Q86W26 655 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 OTUB1Q96FW1 271 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NUDCD1Q96RS6 583 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PPP1R16BQ96T49 567 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NR2E1Q9Y466 385 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PASKQ96RG2 1323 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PDHXO00330 501 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PDE2AO00408 941 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 CES2O00748 559 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 DNALI1O14645 258 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 LZTS3O60299 673 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 DEAF1O75398 565 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 TRIM16O95361 564 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 XRCC5P13010 732 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 MSH2P43246 934 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 AP3M2P53677 418 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 MTMR2Q13614 643 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 CDC37Q16543 378 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NOL9Q5SY16 702 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 ATG16L1Q676U5 607 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 EZH1Q92800 747 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 HEXIM2Q96MH2 286 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 CDK5RAP1Q96SZ6 601 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 MRPL4Q9BYD3 311 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 LCMT1Q9UIC8 334 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PLCL2Q9UPR0 1127 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 USP20Q9Y2K6 914 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 ARL2BPQ9Y2Y0 163 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NPPAP01160 153 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 MMEP08473 750 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 SDHBP21912 280 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 CYP2J2P51589 502 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 KCTD21Q4G0X4 260 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 SYTL3Q4VX76 610 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 MAF1Q9H063 256 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 C12orf4Q9NQ89 552 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 NXF1Q9UBU9 619 aaKnown RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 ZMYND8Q9ULU4 1186 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-206ENST00000367253 PCDHB4Q9Y5E5 795 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 HEG1Q9ULI3 1381 aa9.07□□□□□ -0.96
SYNE1-206ENST00000367253 ANGPT2O15123 496 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 MYO1DO94832 1006 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF202O95125 648 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ADH1AP07327 375 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 NAT2P11245 290 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 SCG2P13521 617 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ATF2P15336 505 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ALOX15P16050 662 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CHKAP35790 457 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 STAT5BP51692 787 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 THOP1P52888 689 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ADKP55263 362 aaKnown RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 RAB14P61106 215 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 RRAGAQ7L523 313 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 BLIDQ8IZY5 108 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CYTH2Q99418 400 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 STK17AQ9UEE5 414 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 GPN3Q9UHW5 284 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 hCG_1642624A0A1W2PR95 340 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 NEURL1BA8MQ27 555 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 HBP1O60381 514 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ATG13O75143 517 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 INHBAP08476 426 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CASP2P42575 452 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 AP2B1P63010 937 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 MXD4Q14582 209 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 TCP11X2Q5H9J9 407 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 BROXQ5VW32 411 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CREB3L3Q68CJ9 461 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 RWDD4Q6NW29 188 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms