RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ALG13Q9NP73 1137 aaKnown RBP12.89□□□□□ -0.35
CLIP3-201ENST00000360535 SAE1Q9UBE0 346 aaPredicted RBP12.89□□□□□ -0.35
CLIP3-201ENST00000360535 ZNF536O15090 1300 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 IVDP26440 423 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 FOXN2P32314 431 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 DSG3P32926 999 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 NOP14P78316 857 aaKnown RBP12.89□□□□□ -0.35
CLIP3-201ENST00000360535 GRK7Q8WTQ7 553 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 FAM151AQ8WW52 585 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 FZD1Q9UP38 647 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 ARL2BPQ9Y2Y0 163 aa12.89□□□□□ -0.35
CLIP3-201ENST00000360535 WDR64B1ANS9 1081 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 GOLGA8RI6L899 631 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 HLA-DRAP01903 254 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 MAGEA4P43358 317 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 RPL7AP62424 266 aaKnown RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 GPS1Q13098 491 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 GPD1LQ8N335 351 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 CLEC4DQ8WXI8 215 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 VTI1AQ96AJ9 217 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 KLF6Q99612 283 aaPredicted RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 MRIQ9BWK5 157 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 C12orf65Q9H3J6 166 aaKnown RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 LRRIQ4A6NIV6 560 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 MUTP22033 750 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 GPC3P51654 580 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 BAATQ14032 418 aaPredicted RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 PGM5Q15124 567 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 ZBTB41Q5SVQ8 909 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 MFSD5Q6N075 450 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 CKAP2Q8WWK9 683 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 DDX27Q96GQ7 796 aaKnown RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 ZNF668Q96K58 619 aaPredicted RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 A1CFQ9NQ94 594 aaKnown RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 TRPC5Q9UL62 973 aaPredicted RBP12.88□□□□□ -0.35
CLIP3-201ENST00000360535 DNPEPQ9ULA0 475 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 UMODL1Q5DID0 1318 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 LY75O60449 1722 aa12.88□□□□□ -0.35
CLIP3-201ENST00000360535 MTA2O94776 668 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 TARSP26639 723 aaKnown RBP12.87□□□□□ -0.35
CLIP3-201ENST00000360535 GNA15P30679 374 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 NLRP11P59045 1033 aaKnown RBP12.87□□□□□ -0.35
CLIP3-201ENST00000360535 LIN9Q5TKA1 542 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 ARHGEF18Q6ZSZ5 1173 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 WNK4Q96J92 1243 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 TBC1D22BQ9NU19 505 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 SUFUQ9UMX1 484 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 ANKRD31Q8N7Z5 1873 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 C10orf71Q711Q0 1435 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 H0Y3Z8 333 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 CA4P22748 312 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 HSD17B4P51659 736 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 ARSEP51690 589 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 NCKAP1LP55160 1127 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 PTK6Q13882 451 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 PKN2Q16513 984 aaKnown RBP12.87□□□□□ -0.35
CLIP3-201ENST00000360535 WLSQ5T9L3 541 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 ERICH1Q86X53 443 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 ZBED8Q8IZ13 594 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-201ENST00000360535 ERP27Q96DN0 273 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 RSRC1Q96IZ7 334 aaKnown RBP12.87□□□□□ -0.35
CLIP3-201ENST00000360535 TMEM109Q9BVC6 243 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 UBIAD1Q9Y5Z9 338 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 SLX4Q8IY92 1834 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 ZNF862O60290 1169 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 CDH16O75309 829 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 KRT1P04264 644 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 MGAT5Q09328 741 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 MIS18BP1Q6P0N0 1132 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 DCUN1D2Q6PH85 259 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 RHBDF2Q6PJF5 856 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 USP37Q86T82 979 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 MAP4K3Q8IVH8 894 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 CCDC89Q8N998 374 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 FAM167BQ9BTA0 163 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 HAO1Q9UJM8 370 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 NEU2Q9Y3R4 380 aa12.87□□□□□ -0.35
CLIP3-201ENST00000360535 SGK1O00141 431 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 UPP2O95045 317 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 GSTA1P08263 222 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 UNGP13051 313 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-201ENST00000360535 IL9RQ01113 521 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 SMTNL2Q2TAL5 461 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 PCNX4Q63HM2 1172 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 TRIM68Q6AZZ1 485 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 SCARA5Q6ZMJ2 495 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 ECHDC2Q86YB7 292 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 MCF2L2Q86YR7 1114 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 RHOT1Q8IXI2 618 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 C4orf19Q8IY42 314 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 C12orf50Q8NA57 414 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-201ENST00000360535 IFT74Q96LB3 600 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 TCHPQ9BT92 498 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 TMEM121Q9BTD3 319 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 POLR3FQ9H1D9 316 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-201ENST00000360535 RIPK3Q9Y572 518 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 PCDHB2Q9Y5E7 798 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 ATRNL1Q5VV63 1379 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 SPATA31A6Q5VVP1 1343 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms