RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CST3P01034 146 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 TMOD1P28289 359 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 TNFSF9P41273 254 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 PPARDQ03181 441 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 PTP4A2Q12974 167 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 SNX1Q13596 522 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 PPP1R7Q15435 360 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 HOOK3Q86VS8 718 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 NLRP14Q86W24 1093 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 CHST7Q9NS84 486 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 CSADQ9Y600 493 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 FAM169AQ9Y6X4 670 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 EFNA5P52803 228 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 UBAP2Q5T6F2 1119 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 BRSK2Q8IWQ3 736 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 MYCBPAPQ8TBZ2 947 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 CCDC113Q9H0I3 377 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 TSPYL1Q9H0U9 437 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 THAP12O43422 761 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 MKRN4PQ13434 485 aaPredicted RBP22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 PLEKHA7Q6IQ23 1121 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 B4GALNT4Q76KP1 1039 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 ZBTB33Q86T24 672 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 ZNF473Q8WTR7 871 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 MAIP1Q8WWC4 291 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 PAGR1Q9BTK6 254 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 FAM129AQ9BZQ8 928 aa22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 MRPL47Q9HD33 250 aaKnown RBP22.18■■□□□ 1.14
CCDC88B-203ENST00000359902 TP73O15350 636 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 TOM1L1O75674 476 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 ARIH2O95376 493 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 POTEJP0CG39 1038 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 RARGP13631 454 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 ZNF132P52740 706 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 KRT17Q04695 432 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 SLMAPQ14BN4 828 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 IER5Q5VY09 327 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 MMS22LQ6ZRQ5 1243 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 UBR7Q8N806 425 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 ATG4AQ8WYN0 398 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 MRPL4Q9BYD3 311 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 FAM107BQ9H098 131 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 RASSF4Q9H2L5 321 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 AZI2Q9H6S1 392 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 PPANQ9NQ55 473 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 E7EVH7 732 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 O00370 1275 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 IRF6O14896 467 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 CNMDO75829 334 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 ASS1P00966 412 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 BYSLQ13895 437 aaKnown RBP22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 WDR49Q8IV35 697 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 ZNF606Q8WXB4 792 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 PGM2Q96G03 612 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 TCHPQ9BT92 498 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 WHRNQ9P202 907 aa22.17■■□□□ 1.14
CCDC88B-203ENST00000359902 SOCS7O14512 581 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 FAM107AO95990 144 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 SRGAP2CP0DJJ0 459 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 FGFR4P22455 802 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 MARK3P27448 753 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 AP3M2P53677 418 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 TAS2R40P59535 323 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 IRX3P78415 501 aaPredicted RBP22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 C1QBPQ07021 282 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 LAMTOR4Q0VGL1 99 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 FAM167AQ96KS9 214 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 ACO2Q99798 780 aaKnown RBP22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 DCLK3Q9C098 648 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 PPME1Q9Y570 386 aa22.16■■□□□ 1.14
CCDC88B-203ENST00000359902 A0A0G2JLL6 359 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 RIPK2O43353 540 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 MAGEA9P43362 315 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 CALCOCO2Q13137 446 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 GRM1Q13255 1194 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 CDCA2Q69YH5 1023 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 PRRT2Q7Z6L0 340 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 RHOT1Q8IXI2 618 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 GPR20Q99678 358 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 IMPG2Q9BZV3 1241 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 ASCC2Q9H1I8 757 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 ZBTB42B2RXF5 422 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 ADM5C9JUS6 153 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 PSTPIP1O43586 416 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 TRAPPC3O43617 180 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 HSDL1Q3SXM5 330 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 TRIM50Q86XT4 487 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 TMEM109Q9BVC6 243 aa22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 R3HDM2Q9Y2K5 976 aaKnown RBP22.15■■□□□ 1.14
CCDC88B-203ENST00000359902 TLDC2A0PJX2 215 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 GMNCA6NCL1 334 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 PGK2P07205 417 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 PAEPP09466 180 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 RALAP11233 206 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 IVDP26440 423 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 KLF1Q13351 362 aaPredicted RBP22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 PPP1R2P3Q6NXS1 205 aa22.14■■□□□ 1.14
CCDC88B-203ENST00000359902 RNF149Q8NC42 400 aa22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms