RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 TTC27Q6P3X3 843 aa16.64■□□□□ 0.25
RTN3-205ENST00000356000 COPS6Q7L5N1 327 aa16.64■□□□□ 0.25
RTN3-205ENST00000356000 ZNF410Q86VK4 478 aa16.64■□□□□ 0.25
RTN3-205ENST00000356000 PRELID2Q8N945 189 aa16.64■□□□□ 0.25
RTN3-205ENST00000356000 NPHS2Q9NP85 383 aa16.64■□□□□ 0.25
RTN3-205ENST00000356000 TBK1Q9UHD2 729 aa16.64■□□□□ 0.25
RTN3-205ENST00000356000 VCPP55072 806 aaKnown RBP16.63■□□□□ 0.25
RTN3-205ENST00000356000 AQP4P55087 323 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 NSUN2Q08J23 767 aaKnown RBP eCLIP16.63■□□□□ 0.25
RTN3-205ENST00000356000 KCTD21Q4G0X4 260 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 METTL21CQ5VZV1 264 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 SNRNP48Q6IEG0 339 aaKnown RBP16.63■□□□□ 0.25
RTN3-205ENST00000356000 GET4Q7L5D6 327 aaPredicted RBP16.63■□□□□ 0.25
RTN3-205ENST00000356000 BIRC8Q96P09 236 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 GRIP2Q9C0E4 1043 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 KLHL4Q9C0H6 718 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 DKK3Q9UBP4 350 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 LZTS1Q9Y250 596 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 NOX1Q9Y5S8 564 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 AFDNP55196 1824 aaKnown RBP16.63■□□□□ 0.25
RTN3-205ENST00000356000 CCDC88AQ3V6T2 1871 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 TAF1LQ8IZX4 1826 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 PRPF4O43172 522 aaKnown RBP eCLIP16.63■□□□□ 0.253e-8■□□□□ 10.6
RTN3-205ENST00000356000 SPAG7O75391 227 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 PCCAP05165 728 aaPredicted RBP16.63■□□□□ 0.25
RTN3-205ENST00000356000 ADORA1P30542 326 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 AKAP4Q5JQC9 854 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 FBXL19Q6PCT2 694 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 AAGABQ6PD74 315 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 DHDDSQ86SQ9 333 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 EXOC8Q8IYI6 725 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 ALLCQ8N6M5 410 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 BTBD9Q96Q07 612 aa16.63■□□□□ 0.25
RTN3-205ENST00000356000 ZMYM2Q9UBW7 1377 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 TIAM2Q8IVF5 1701 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 CIB2O75838 187 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 IDH1O75874 414 aaKnown RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 CTNNA2P26232 953 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 ANXA13P27216 316 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 ZNF211Q13398 564 aaPredicted RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 NKX1-1Q15270 411 aaPredicted RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 GUF1Q8N442 669 aaKnown RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.62■□□□□ 0.25
RTN3-205ENST00000356000 ZNF784Q8NCA9 323 aaPredicted RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 CCDC110Q8TBZ0 833 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 SH3RF3Q8TEJ3 882 aaPredicted RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 OSBPL8Q9BZF1 889 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 HEY2Q9UBP5 337 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 CEPT1Q9Y6K0 416 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 A0A1W2PRG0 241 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 CIAO1O76071 339 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 CDH2P19022 906 aaPredicted RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 PLCG1P19174 1290 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 CCDC62Q6P9F0 684 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 CCDC137Q6PK04 289 aaKnown RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 MFSD6Q6ZSS7 791 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 ANKRD13DQ6ZTN6 518 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 MARVELD2Q8N4S9 558 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 NSMCE3Q96MG7 304 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 MRPL46Q9H2W6 279 aaKnown RBP16.62■□□□□ 0.25
RTN3-205ENST00000356000 PSTPIP2Q9H939 334 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 C17orf75Q9HAS0 396 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 TFCP2L1Q9NZI6 479 aa16.62■□□□□ 0.25
RTN3-205ENST00000356000 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.62■□□□□ 0.25
RTN3-205ENST00000356000 PPATQ06203 517 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 ELMSAN1Q6PJG2 1045 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 FOXR2Q6PJQ5 311 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 MPRIPQ6WCQ1 1025 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 C14orf80Q86SX3 495 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 SLC7A5P1Q8MH63 180 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 MAML1Q92585 1016 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 SKA1Q96BD8 255 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 TTC25Q96NG3 672 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 SH3GL1Q99961 368 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 LRRC4BQ9NT99 713 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 ANKFY1Q9P2R3 1169 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 CCNL1Q9UK58 526 aaPredicted RBP16.61■□□□□ 0.25
RTN3-205ENST00000356000 CARD8Q9Y2G2 431 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 ATAD5Q96QE3 1844 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 A0A088AWK7 358 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.61■□□□□ 0.25
RTN3-205ENST00000356000 TP73O15350 636 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 RNMTO43148 476 aaKnown RBP16.61■□□□□ 0.25
RTN3-205ENST00000356000 CD48P09326 243 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 ENTPD1P49961 510 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 ARHGAP4P98171 946 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 CALCOCO2Q13137 446 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 C16orf72Q14CZ0 275 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 NLRX1Q86UT6 975 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 TMPRSS6Q8IU80 811 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 HELBQ8NG08 1087 aaPredicted RBP16.61■□□□□ 0.25
RTN3-205ENST00000356000 DDI1Q8WTU0 396 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 NACC2Q96BF6 587 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 OSBPL6Q9BZF3 934 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 NDEL1Q9GZM8 345 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 ARHGEF4Q9NR80 690 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 DNAJC17Q9NVM6 304 aaKnown RBP16.61■□□□□ 0.25
RTN3-205ENST00000356000 RABL2BQ9UNT1 228 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 N6AMT1Q9Y5N5 214 aa16.61■□□□□ 0.25
RTN3-205ENST00000356000 COL4A3BPQ9Y5P4 624 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms