RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TRAF3IP3Q9Y228 551 aa2.57□□□□□ -2
VPS54-202ENST00000354504 AFG3L2Q9Y4W6 797 aa2.57□□□□□ -2
VPS54-202ENST00000354504 PHLPP2Q6ZVD8 1323 aa2.57□□□□□ -2
VPS54-202ENST00000354504 FRYLO94915 3013 aa2.57□□□□□ -2
VPS54-202ENST00000354504 DNAJC25-GNG10A0A024R161 153 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SMCO2A6NFE2 343 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TRIM75PA6NK02 468 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MAP2K7O14733 419 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MSCO60682 206 aa2.57□□□□□ -2
VPS54-202ENST00000354504 EOMESO95936 686 aa2.57□□□□□ -2
VPS54-202ENST00000354504 JUNBP17275 347 aaPredicted RBP2.57□□□□□ -2
VPS54-202ENST00000354504 ADSSP30520 456 aa2.57□□□□□ -2
VPS54-202ENST00000354504 STAT3P40763 770 aa2.57□□□□□ -2
VPS54-202ENST00000354504 CD97P48960 835 aa2.57□□□□□ -2
VPS54-202ENST00000354504 USP11P51784 963 aa2.57□□□□□ -2
VPS54-202ENST00000354504 PABPC4Q13310 644 aaKnown RBP eCLIP2.57□□□□□ -2
VPS54-202ENST00000354504 PCBP1Q15365 356 aaKnown RBP eCLIP2.57□□□□□ -2
VPS54-202ENST00000354504 EXOSC6Q5RKV6 272 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 TMEM63BQ5T3F8 832 aa2.57□□□□□ -2
VPS54-202ENST00000354504 GORABQ5T7V8 394 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ZPBP2Q6X784 338 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TRAPPC11Q7Z392 1133 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SYT2Q8N9I0 419 aaPredicted RBP2.57□□□□□ -2
VPS54-202ENST00000354504 LRRC57Q8N9N7 239 aa2.57□□□□□ -2
VPS54-202ENST00000354504 HEXIM2Q96MH2 286 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 RUSC1Q9BVN2 902 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ZNF277Q9NRM2 450 aaPredicted RBP2.57□□□□□ -2
VPS54-202ENST00000354504 ARHGAP28Q9P2N2 729 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SUCOQ9UBS9 1254 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 TRIM10Q9UDY6 481 aa2.57□□□□□ -2
VPS54-202ENST00000354504 GJD2Q9UKL4 321 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SCAF8Q9UPN6 1271 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 NFE2L3Q9Y4A8 694 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ASPMQ8IZT6 3477 aa2.57□□□□□ -2
VPS54-202ENST00000354504 CCDC196A0A1B0GTZ2 297 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TCRBV5S1A1TA0A578 114 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TTC26A0AVF1 554 aa2.57□□□□□ -2
VPS54-202ENST00000354504 LGALS16A8MUM7 142 aa2.57□□□□□ -2
VPS54-202ENST00000354504 RSPH10B2B2RC85 870 aa2.57□□□□□ -2
VPS54-202ENST00000354504 RGS13O14921 159 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TBX3O15119 743 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ADCY6O43306 1168 aa2.57□□□□□ -2
VPS54-202ENST00000354504 LYPLA2O95372 231 aa2.57□□□□□ -2
VPS54-202ENST00000354504 FURINP09958 794 aa2.57□□□□□ -2
VPS54-202ENST00000354504 OR52Z1P0C646 297 aa2.57□□□□□ -2
VPS54-202ENST00000354504 RSPH10BP0C881 870 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ARP10275 920 aa2.57□□□□□ -2
VPS54-202ENST00000354504 LCP1P13796 627 aa2.57□□□□□ -2
VPS54-202ENST00000354504 KCNA2P16389 499 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MCM7P33993 719 aa2.57□□□□□ -2
VPS54-202ENST00000354504 KCNJ4P48050 445 aa2.57□□□□□ -2
VPS54-202ENST00000354504 IREB2P48200 963 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 EPHA7Q15375 998 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SV2CQ496J9 727 aa2.57□□□□□ -2
VPS54-202ENST00000354504 NBPF12Q5TAG4 269 aaPredicted RBP2.57□□□□□ -2
VPS54-202ENST00000354504 DCAF12L1Q5VU92 463 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ANKRD34AQ69YU3 496 aa2.57□□□□□ -2
VPS54-202ENST00000354504 KCNT2Q6UVM3 1135 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TMEM179Q6ZVK1 233 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SLFN11Q7Z7L1 901 aa2.57□□□□□ -2
VPS54-202ENST00000354504 NEK8Q86SG6 692 aa2.57□□□□□ -2
VPS54-202ENST00000354504 DZIP1Q86YF9 867 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 POU5F2Q8N7G0 328 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MB21D1Q8N884 522 aa2.57□□□□□ -2
VPS54-202ENST00000354504 PRPF38AQ8NAV1 312 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.57□□□□□ -2
VPS54-202ENST00000354504 WASF1Q92558 559 aa2.57□□□□□ -2
VPS54-202ENST00000354504 GATA6Q92908 595 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TEKT1Q969V4 418 aa2.57□□□□□ -2
VPS54-202ENST00000354504 PPP1R14AQ96A00 147 aa2.57□□□□□ -2
VPS54-202ENST00000354504 COX4I2Q96KJ9 171 aa2.57□□□□□ -2
VPS54-202ENST00000354504 POLR3CQ9BUI4 534 aaPredicted RBP2.57□□□□□ -2
VPS54-202ENST00000354504 SPATA9Q9BWV2 254 aa2.57□□□□□ -2
VPS54-202ENST00000354504 KRTAP9-9Q9BYP9 154 aa2.57□□□□□ -2
VPS54-202ENST00000354504 KRTAP9-4Q9BYQ2 154 aa2.57□□□□□ -2
VPS54-202ENST00000354504 DHX36Q9H2U1 1008 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 ST6GALNAC4Q9H4F1 302 aa2.57□□□□□ -2
VPS54-202ENST00000354504 THAP9Q9H5L6 903 aa2.57□□□□□ -2
VPS54-202ENST00000354504 NOL6Q9H6R4 1146 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 FBXO28Q9NVF7 368 aa2.57□□□□□ -2
VPS54-202ENST00000354504 PI4KBQ9UBF8 816 aa2.57□□□□□ -2
VPS54-202ENST00000354504 RAB21Q9UL25 225 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MRPS23Q9Y3D9 190 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 DUSP10Q9Y6W6 482 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SYNRGQ9UMZ2 1314 aa2.57□□□□□ -2
VPS54-202ENST00000354504 IGSF9BQ9UPX0 1349 aa2.57□□□□□ -2
VPS54-202ENST00000354504 KAT6AQ92794 2004 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MIA3Q5JRA6 1907 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MTCL1Q9Y4B5 1905 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 LOC101059915A0A1B0GWI6 518 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 TSPY2A6NKD2 308 aa2.56□□□□□ -2
VPS54-202ENST00000354504 GOLGA6L22H0YM25 854 aa2.56□□□□□ -2
VPS54-202ENST00000354504 H3BQV1 296 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PMM2O15305 246 aa2.56□□□□□ -2
VPS54-202ENST00000354504 STX10O60499 249 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PEX10O60683 326 aa2.56□□□□□ -2
VPS54-202ENST00000354504 ATP9AO75110 1047 aa2.56□□□□□ -2
VPS54-202ENST00000354504 USP2O75604 605 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 DNAJC8O75937 253 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 TSPY3P0CV98 308 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms