RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 DRP2Q13474 957 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 TARBP2Q15633 366 aaKnown RBP23.2■■□□□ 1.3
SHMT1-202ENST00000352886 TRIM72Q6ZMU5 477 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 AZI2Q9H6S1 392 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 TMEM134Q9H6X4 195 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 BTBD7Q9P203 1132 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 ASIC3Q9UHC3 531 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 PPP2R3BQ9Y5P8 575 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 ATXN2Q99700 1313 aaKnown RBP23.2■■□□□ 1.3
SHMT1-202ENST00000352886 O00370 1275 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 TBXAS1P24557 533 aaPredicted RBP23.2■■□□□ 1.3
SHMT1-202ENST00000352886 LIG3P49916 1009 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 STAT5BP51692 787 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 HIRAP54198 1017 aaPredicted RBP23.2■■□□□ 1.3
SHMT1-202ENST00000352886 SCARA3Q6AZY7 606 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 MICALCLQ6ZW33 695 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 CCDC50Q8IVM0 306 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 MDM1Q8TC05 714 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 MAIP1Q8WWC4 291 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 FAM129AQ9BZQ8 928 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 NRBP2Q9NSY0 501 aa23.2■■□□□ 1.3
SHMT1-202ENST00000352886 TTLL13PA6NNM8 815 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 RGS16O15492 202 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-202ENST00000352886 THAP12O43422 761 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 KIAA0754O94854 1291 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 POTEJP0CG39 1038 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 CDR1P51861 262 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 NCOA4Q13772 614 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 WHRNQ9P202 907 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 TP73O15350 636 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 MEFVO15553 781 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-202ENST00000352886 ADCY3O60266 1144 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 USP2O75604 605 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-202ENST00000352886 ADCY2Q08462 1091 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 MAMLD1Q13495 774 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 VGLL4Q14135 290 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 MMS22LQ6ZRQ5 1243 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 MICALL1Q8N3F8 863 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 EPS8L3Q8TE67 593 aaKnown RBP23.19■■□□□ 1.3
SHMT1-202ENST00000352886 MRPL47Q9HD33 250 aaKnown RBP23.19■■□□□ 1.3
SHMT1-202ENST00000352886 SNCAIPQ9Y6H5 919 aa23.19■■□□□ 1.3
SHMT1-202ENST00000352886 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-202ENST00000352886 HEMGNQ9BXL5 484 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 DCLK3Q9C098 648 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 CNTN6Q9UQ52 1028 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 RALAP11233 206 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 TCF7P36402 384 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-202ENST00000352886 TNFSF9P41273 254 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 C6orf118Q5T5N4 469 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 EEPD1Q7L9B9 569 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 PHF13Q86YI8 300 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-202ENST00000352886 CNKSR2Q8WXI2 1034 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 VCPIP1Q96JH7 1222 aa23.18■■□□□ 1.3
SHMT1-202ENST00000352886 R3HDM2Q9Y2K5 976 aaKnown RBP23.18■■□□□ 1.3
SHMT1-202ENST00000352886 SOWAHBA6NEL2 793 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 MAN1A1P33908 653 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 SLCO1A2P46721 670 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 TAS2R40P59535 323 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 IFI35P80217 286 aaPredicted RBP23.17■■□□□ 1.3
SHMT1-202ENST00000352886 PTP4A2Q12974 167 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 TRIP13Q15645 432 aaPredicted RBP23.17■■□□□ 1.3
SHMT1-202ENST00000352886 FAM160B1Q5W0V3 765 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 NCAPG2Q86XI2 1143 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 RIOX2Q8IUF8 465 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 RHOT1Q8IXI2 618 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 OTUD6BQ8N6M0 293 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 PRPF31Q8WWY3 499 aaKnown RBP23.17■■□□□ 1.3
SHMT1-202ENST00000352886 CCDC114Q96M63 670 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 PSTPIP1O43586 416 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 EDNRBP24530 442 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 NEDD9Q14511 834 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 QPCTQ16769 361 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 PLEKHA7Q6IQ23 1121 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 DLK2Q6UY11 383 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 CROCCP2Q86T23 111 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 ZBTB33Q86T24 672 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 C3orf20Q8ND61 904 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 GRK7Q8WTQ7 553 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 SELENOSQ9BQE4 189 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 TMEM109Q9BVC6 243 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 IMPG2Q9BZV3 1241 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 AAASQ9NRG9 546 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 USTQ9Y2C2 406 aa23.17■■□□□ 1.3
SHMT1-202ENST00000352886 A0A0G2JMZ2 1700 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 TLR3O15455 904 aaKnown RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 MAFO75444 373 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 GJB6O95452 261 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 GAS8O95995 478 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 CST3P01034 146 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 PTK6Q13882 451 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 SNF8Q96H20 258 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 TCHPQ9BT92 498 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 CDC42EP4Q9H3Q1 356 aaKnown RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 SCINQ9Y6U3 715 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 AGTP01019 485 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 CHN1P15882 459 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 ITIH2P19823 946 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 GJC1P36383 396 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 SSR1P43307 286 aaKnown RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 MMP13P45452 471 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms