RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 MYO1CO00159 1063 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 GAS2O43903 313 aaKnown RBP16.06■□□□□ 0.16
TPM3-208ENST00000341485 PHF2O75151 1096 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 PTGIRP43119 386 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 ENPEPQ07075 957 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 STRN3Q13033 797 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 SKIDA1Q1XH10 827 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 PRAMEF19Q5SWL8 479 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 USP37Q86T82 979 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 USP6NLQ92738 828 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 TXLNGYQ9BZA5 131 aa16.06■□□□□ 0.16
TPM3-208ENST00000341485 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.06■□□□□ 0.16
TPM3-208ENST00000341485 A6NNZ2 444 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 MYO1FO00160 1098 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 MYZAPP0CAP1 466 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 PYGMP11217 842 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 HSPA6P17066 643 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 SCP2P22307 547 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 CTNNA2P26232 953 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 DHX9Q08211 1270 aaKnown RBP16.05■□□□□ 0.16
TPM3-208ENST00000341485 NOGQ13253 232 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 CCL14Q16627 93 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 TUBB8Q3ZCM7 444 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 IER5Q5VY09 327 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 ACAD10Q6JQN1 1059 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 C15orf39Q6ZRI6 1047 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 BCAS4Q8TDM0 211 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 C18orf8Q96DM3 657 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 ZDHHC18Q9NUE0 388 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 DOCK3Q8IZD9 2030 aa16.05■□□□□ 0.16
TPM3-208ENST00000341485 GOLGA6L10A6NI86 522 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 EXTL3O43909 919 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 ZNF286BP0CG31 522 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 KRT5P13647 590 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 CCT5P48643 541 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 FCGRTP55899 365 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 WNT7BP56706 349 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 GCNT1Q02742 428 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 CLEC16AQ2KHT3 1053 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 SEL1L2Q5TEA6 688 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 OLFML2BQ68BL8 750 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 LMBRD2Q68DH5 695 aaPredicted RBP16.04■□□□□ 0.16
TPM3-208ENST00000341485 TRAPPC12Q8WVT3 735 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 FMO2Q99518 471 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 RNPEPQ9H4A4 650 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 UVRAGQ9P2Y5 699 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 ZBTB42B2RXF5 422 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 KIAA0391O15091 583 aaKnown RBP16.04■□□□□ 0.16
TPM3-208ENST00000341485 SPOPO43791 374 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 PPFIA2O75334 1257 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 MMP3P08254 477 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 CHRNA3P32297 505 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 LIG4P49917 911 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 IGBP1P78318 339 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 IRF5Q13568 498 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 DEFB115Q30KQ5 88 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 ZNF484Q5JVG2 852 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 TTC27Q6P3X3 843 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 LRRC71Q8N4P6 559 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 PSPC1Q8WXF1 523 aaKnown RBP16.04■□□□□ 0.16
TPM3-208ENST00000341485 GJD2Q9UKL4 321 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 PCDHA3Q9Y5H8 950 aa16.04■□□□□ 0.16
TPM3-208ENST00000341485 SIP14410 1827 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 TCRBV7S2A1N4TA0A589 114 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 K7ERI5 159 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 DYNC1LI2O43237 492 aaPredicted RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 AOC2O75106 756 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 ZC3H11AO75152 810 aaKnown RBP eCLIP16.03■□□□□ 0.16
TPM3-208ENST00000341485 CLDN10P78369 228 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 IRX5P78411 483 aaPredicted RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 GUCY1A3Q02108 690 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 DRP2Q13474 957 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 CAPSQ13938 189 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 PSMD6Q15008 389 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 DGKDQ16760 1214 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 ZDHHC24Q6UX98 284 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 ENOSF1Q7L5Y1 443 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 PRPF31Q8WWY3 499 aaKnown RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 MAGOHBQ96A72 148 aaKnown RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 CENPHQ9H3R5 247 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 CNOT8Q9UFF9 292 aaKnown RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 PCYOX1Q9UHG3 505 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 RASAL2Q9UJF2 1139 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 SNX24Q9Y343 169 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 TRIM66O15016 1216 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 INSRRP14616 1297 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 DRG2P55039 364 aaKnown RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 NLRP11P59045 1033 aaKnown RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 MXD4Q14582 209 aaPredicted RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 SIX1Q15475 284 aaPredicted RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 SLC13A5Q86YT5 568 aaPredicted RBP16.03■□□□□ 0.16
TPM3-208ENST00000341485 CAPNS2Q96L46 248 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 HAPLN2Q9GZV7 340 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 LRRC4CQ9HCJ2 640 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 C1orf112Q9NSG2 853 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 GRHL1Q9NZI5 618 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 ATP8A1Q9Y2Q0 1164 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 STYXL1Q9Y6J8 313 aa16.03■□□□□ 0.16
TPM3-208ENST00000341485 MGAMO43451 1857 aa16.02■□□□□ 0.16
TPM3-208ENST00000341485 IGKV6-21A0A0C4DH24 114 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms