RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 HAUS4Q9H6D7 363 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 DPP3Q9NY33 737 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 SMIM28A0A1B0GU29 152 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 ANO9A1A5B4 782 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF263O14978 683 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 AKR1B10O60218 316 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 MGEA5O60502 916 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 TFRCP02786 760 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 ITGB3P05106 788 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 CLCN1P35523 988 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 ASPAP45381 313 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 C10orf76Q5T2E6 689 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF598Q86UK7 904 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 VPS36Q86VN1 386 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 TXLNBQ8N3L3 684 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 SLC30A5Q8TAD4 765 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 EPS8L1Q8TE68 723 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 PPP1R10Q96QC0 940 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 RNF39Q9H2S5 420 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 DEF6Q9H4E7 631 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 UBN1Q9NPG3 1134 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 RRAGDQ9NQL2 400 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 RGS18Q9NS28 235 aa16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 NOCTQ9UK39 431 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-202ENST00000334448 KIF2AO00139 706 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 PTGESO14684 152 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 PJA2O43164 708 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 CXCL10P02778 98 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 PNMA6AP0CW24 399 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 ITGA4P13612 1032 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 ATF7P17544 494 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 AKAP5P24588 427 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 LRPAP1P30533 357 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 VAV2P52735 878 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 BPIFB4P59827 614 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 YWHAEP62258 255 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 FAM189BP81408 668 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 GPNMBQ14956 572 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 SPA17Q15506 151 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 SCARA3Q6AZY7 606 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 SPOPLQ6IQ16 392 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 TTC39CQ8N584 583 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 ACRBPQ8NEB7 543 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 PGBD4Q96DM1 585 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 ARID3AQ99856 593 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 IFIH1Q9BYX4 1025 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 TSPYL2Q9H2G4 693 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 CYP3A43Q9HB55 503 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 LUC7LQ9NQ29 371 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 PRDM10Q9NQV6 1147 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 SLC38A7Q9NVC3 462 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 TBX21Q9UL17 535 aa16.01■□□□□ 0.15
CCDC88C-202ENST00000334448 UMODL1Q5DID0 1318 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 DCDC2CA8MYV0 355 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 C9IYK1 514 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 MYCP01106 439 aaPredicted RBP16■□□□□ 0.15
CCDC88C-202ENST00000334448 P4HA1P13674 534 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 POLR2BP30876 1174 aaKnown RBP16■□□□□ 0.15
CCDC88C-202ENST00000334448 PNPLA4P41247 253 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 ARHGAP25P42331 645 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 ARID5AQ03989 594 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 PLEKHG4Q58EX7 1191 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 ZNF667Q5HYK9 610 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 AGMOQ6ZNB7 445 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 ZNF677Q86XU0 584 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 GSTCDQ8NEC7 633 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 APBB2Q92870 758 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 ADAM2Q99965 735 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 CXCL16Q9H2A7 254 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 PARP2Q9UGN5 583 aa16■□□□□ 0.15
CCDC88C-202ENST00000334448 CITO14578 2027 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 A0A087X0T9 212 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 DDX3XO00571 662 aaKnown RBP eCLIP15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 PIRO00625 290 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 PQBP1O60828 265 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 NBNO60934 754 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 EOMESO95936 686 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 FAM228BP0C875 321 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 CYP11B1P15538 503 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 TLE2Q04725 743 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 FAAP100Q0VG06 881 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 NAB2Q15742 525 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 C9orf57Q5W0N0 161 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 SLC24A5Q71RS6 500 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 LIMS2Q7Z4I7 341 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 ECHDC2Q86YB7 292 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 LINC01599Q8WXQ3 324 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 RSPH1Q8WYR4 309 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 DDX1Q92499 740 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 HPDLQ96IR7 371 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 APOL6Q9BWW8 343 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 TSGA10Q9BZW7 698 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 TRMT1Q9NXH9 659 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 TUBGCP4Q9UGJ1 667 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 NAGPAQ9UK23 515 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 INTUQ9ULD6 942 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 AGAP1Q9UPQ3 857 aa15.99■□□□□ 0.15
CCDC88C-202ENST00000334448 BTNL10A8MVZ5 291 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 CYP26A1O43174 497 aa15.98■□□□□ 0.15
CCDC88C-202ENST00000334448 PDE6CP51160 858 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms