RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PLEKHA7Q6IQ23 1121 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 ELMO2Q96JJ3 720 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 TBC1D22BQ9NU19 505 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 TSC22D2O75157 780 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 KYAT1Q16773 422 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 C4orf33Q8N1A6 199 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 RTL3Q8N8U3 475 aaKnown RBP14.53□□□□□ -0.08
CSPG4-201ENST00000308508 OSBP2Q969R2 916 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 LBHD1Q9BQE6 289 aaPredicted RBP14.53□□□□□ -0.08
CSPG4-201ENST00000308508 ITIH6Q6UXX5 1313 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SAC3D1A6NKF1 404 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 PPEF1O14829 653 aaPredicted RBP14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SPRP35270 261 aaPredicted RBP14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SENP7Q9BQF6 1050 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 PCDHB8Q9UN66 801 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 UBN2Q6ZU65 1347 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 PLEKHA8P1O95397 391 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SCP2P22307 547 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 ATXN3P54252 364 aaPredicted RBP14.52□□□□□ -0.08
CSPG4-201ENST00000308508 DGKHQ86XP1 1220 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 GLYCTKQ8IVS8 523 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SNRPAP09012 282 aaKnown RBP14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SESN2P58004 480 aaPredicted RBP14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SGSM1Q2NKQ1 1148 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 SUPT20HL1Q3ZLR7 823 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 CNKSR1Q969H4 720 aa14.52□□□□□ -0.08
CSPG4-201ENST00000308508 USP17L3A6NCW0 530 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 USP17L4A6NCW7 530 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 STX5Q13190 355 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 PTGISQ16647 500 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 LRRC8DQ7L1W4 858 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 USP17L1Q7RTZ2 530 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 CDH24Q86UP0 819 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 RBM46Q8TBY0 533 aaKnown RBP14.52□□□□□ -0.09
CSPG4-201ENST00000308508 KLHL4Q9C0H6 718 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 CD248Q9HCU0 757 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 NCKAP5LQ9HCH0 1330 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 ABCC10Q5T3U5 1492 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 DENND3A2RUS2 1198 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 ZBTB22O15209 634 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 ASNA1O43681 348 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 CAPN1P07384 714 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 TARSP26639 723 aaKnown RBP14.52□□□□□ -0.09
CSPG4-201ENST00000308508 TPI1P60174 286 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 USP10Q14694 798 aaKnown RBP14.52□□□□□ -0.09
CSPG4-201ENST00000308508 SLC35G2Q8TBE7 412 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 DDX50Q9BQ39 737 aaKnown RBP14.52□□□□□ -0.09
CSPG4-201ENST00000308508 ECSITQ9BQ95 431 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 MRPL4Q9BYD3 311 aaKnown RBP14.52□□□□□ -0.09
CSPG4-201ENST00000308508 KRT84Q9NSB2 600 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 TUBGCP4Q9UGJ1 667 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 TEX33O43247 280 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 PIGHQ14442 188 aaPredicted RBP14.52□□□□□ -0.09
CSPG4-201ENST00000308508 MEI1Q5TIA1 1274 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 FAM45BPQ6NSW5 357 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 SHCBP1Q8NEM2 672 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 CALML6Q8TD86 181 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 CLEC4MQ9H2X3 399 aaPredicted RBP14.52□□□□□ -0.09
CSPG4-201ENST00000308508 PCDHA6Q9UN73 950 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 PCDHA8Q9Y5H6 950 aa14.52□□□□□ -0.09
CSPG4-201ENST00000308508 ZBTB5O15062 677 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 CLPTM1O96005 669 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 C3orf62Q6ZUJ4 267 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 NLRP9Q7RTR0 991 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 PRKAB2O43741 272 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 SNUPNO95149 360 aaKnown RBP14.51□□□□□ -0.09
CSPG4-201ENST00000308508 PHKG2P15735 406 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 EIF2AK2P19525 551 aaKnown RBP14.51□□□□□ -0.09
CSPG4-201ENST00000308508 SFNP31947 248 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 SMAD1Q15797 465 aaKnown RBP14.51□□□□□ -0.09
CSPG4-201ENST00000308508 KIZQ2M2Z5 673 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 LRRC39Q96DD0 335 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 SPRTNQ9H040 489 aaPredicted RBP14.51□□□□□ -0.09
CSPG4-201ENST00000308508 TALDO1P37837 337 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 KCNB1Q14721 858 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 OR8H2Q8N162 312 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 PUS3Q9BZE2 481 aaKnown RBP14.51□□□□□ -0.09
CSPG4-201ENST00000308508 VPS33BQ9H267 617 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 PRR29P0C7W0 189 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 GYS1P13807 737 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 NQO1P15559 274 aaKnown RBP14.51□□□□□ -0.09
CSPG4-201ENST00000308508 STAT3P40763 770 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 CDK8P49336 464 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 COG2Q14746 738 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 HEATR4Q86WZ0 1026 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 CATSPER2Q96P56 530 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 DCLRE1BQ9H816 532 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 SYTL3Q4VX76 610 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 RAB6BQ9NRW1 208 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 EMSYQ7Z589 1322 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 KANSL1LA0AUZ9 987 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 USP17L8P0C7I0 530 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 NUDT2P50583 147 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 CDK17Q00537 523 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 DMPKQ09013 629 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 E2F7Q96AV8 911 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 SUPT3HB4E1H0 165 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 POLBP06746 335 aa14.51□□□□□ -0.09
CSPG4-201ENST00000308508 SLC16A3O15427 465 aaKnown RBP14.5□□□□□ -0.09
CSPG4-201ENST00000308508 NDUFS3O75489 264 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms