RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NCAM2O15394 837 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 BRAFP15056 766 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PMLP29590 882 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ITGA1P56199 1179 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 RAB14P61106 215 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PIGHQ14442 188 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 KIAA1841Q6NSI8 718 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 KRT74Q7RTS7 529 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 FUKQ8N0W3 1084 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PACRGLQ8N7B6 248 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 STK32AQ8WU08 396 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CLMNQ96JQ2 1002 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SAP30BPQ9UHR5 308 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PADI4Q9UM07 663 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 RAD54BQ9Y620 910 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SALL1Q9NSC2 1324 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PENKP01210 267 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 WEE2P0C1S8 567 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ATP1A3P13637 1013 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 MTERF2Q49AM1 385 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 RRM2BQ7LG56 351 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 B4GALNT2Q8NHY0 566 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TOP1MTQ969P6 601 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ASPSCR1Q9BZE9 553 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 WDR12Q9GZL7 423 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ASCC2Q9H1I8 757 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TMEM45AQ9NWC5 275 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TMEM9Q9P0T7 183 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 GCNT4Q9P109 453 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 TLK1Q9UKI8 766 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 BAIAP3O94812 1187 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SRGAP2CP0DJJ0 459 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 MRPS15P82914 257 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CNGA2Q16280 664 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 KCNV1Q6PIU1 500 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 IKBIPQ70UQ0 350 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SIRT2Q8IXJ6 389 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 HMG20AQ9NP66 347 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CAPN6Q9Y6Q1 641 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF532Q9HCE3 1301 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ZSCAN9O15535 394 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CCNT1O60563 726 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PECAM1P16284 738 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SP100P23497 879 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 S100A5P33763 92 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SCNN1DP51172 638 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 RAD23BP54727 409 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CSNK2BP67870 215 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SLC34A1Q06495 639 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 GOLGA8FQ08AF8 430 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 GOLGA8DPQ0D2H9 430 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ARMCX4Q5H9R4 360 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 CEP78Q5JTW2 689 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 DEPDC1Q5TB30 811 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ANKS3Q6ZW76 656 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 KRT73Q86Y46 540 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 GALNT15Q8N3T1 639 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 MAGEB6Q8N7X4 407 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 RDH11Q8TC12 318 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 SMCR8Q8TEV9 937 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 STARD8Q92502 1023 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 DDX47Q9H0S4 455 aaKnown RBP5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PTTG2Q9NZH5 202 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 NRBP1Q9UHY1 535 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF318Q5VUA4 2279 aa5.5□□□□□ -1.53
SCN1A-201ENST00000303395 PNMA6FA0A0J9YX94 578 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TK2O00142 265 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 MAPK4P31152 587 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SOX5P35711 763 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 HADHBP55084 474 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PTENP60484 403 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 MAGOHP61326 146 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 POU5F1Q01860 360 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TRIP4Q15650 581 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CNGA3Q16281 694 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 LETM2Q2VYF4 491 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CEP55Q53EZ4 464 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 C6orf52Q5T4I8 152 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 NET1Q7Z628 596 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CDH24Q86UP0 819 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CCDC85AQ96PX6 553 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 DESI2Q9BSY9 194 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SMYD2Q9NRG4 433 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ASNSD1Q9NWL6 643 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CAB39Q9Y376 341 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ERCC6L2Q5T890 1561 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 MAGEB16A2A368 324 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TRAFD1O14545 582 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 JAK2O60674 1132 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 LCA5LO95447 670 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 HIBADHP31937 336 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CASP5P51878 434 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TRMT44Q8IYL2 757 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SVOPQ8N4V2 548 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 DIS3LQ8TF46 1054 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 GTF3C2Q8WUA4 911 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 STON2Q8WXE9 905 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CASP10Q92851 521 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SUCLG2Q96I99 432 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms