RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 EMBQ6PCB8 327 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 MPZL3Q6UWV2 235 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 ENOSF1Q7L5Y1 443 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 BRSK2Q8IWQ3 736 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 EFCAB13Q8IY85 973 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 ACSF2Q96CM8 615 aaPredicted RBP12.25□□□□□ -0.45
CUX1-202ENST00000292538 ZIM3Q96PE6 472 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 APOL6Q9BWW8 343 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 GOLGA6AQ9NYA3 693 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 TNNC2P02585 160 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 NFICP08651 508 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 CYP4A22Q5TCH4 519 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 ZPBP2Q6X784 338 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 C1orf131Q8NDD1 294 aaKnown RBP12.25□□□□□ -0.45
CUX1-202ENST00000292538 OR6J1Q8NGC5 347 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 ATG4AQ8WYN0 398 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 ARL8AQ96BM9 186 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 PTPN18Q99952 460 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 CARD9Q9H257 536 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 CISHQ9NSE2 258 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 TMEM59LQ9UK28 342 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 SMIM23A6NLE4 172 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 GOLGA8SH3BPF8 625 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ACKR2O00590 384 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 LGR5O75473 907 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 SNAI1O95863 264 aaPredicted RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 ACO1P21399 889 aaKnown RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 ATP1A2P50993 1020 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 BPIFB4P59827 614 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 PPFIA1Q13136 1202 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ZNF606Q8WXB4 792 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ANKRD36BP1Q96IX9 119 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ATP8A1Q9Y2Q0 1164 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 PI4K2BG5E9Z4 385 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ZC3H11AO75152 810 aaKnown RBP eCLIP12.24□□□□□ -0.453e-6■■■■□ 25.7
CUX1-202ENST00000292538 ERLIN2O94905 339 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 PIGRP01833 764 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ITGB3P05106 788 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 CYP1A2P05177 515 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 STAG3L1P0CL83 205 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 SMPD1P17405 629 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 RWDD2BP57060 319 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 LACTBP83111 547 aaPredicted RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 CCDC25Q86WR0 208 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 RASGEF1CQ8N431 466 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 NAP1L3Q99457 506 aaPredicted RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 CCDC113Q9H0I3 377 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 C2orf40Q9H1Z8 148 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 CDT1Q9H211 546 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 MED4Q9NPJ6 270 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 DAAM1Q9Y4D1 1078 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 MCM3APO60318 1980 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 LACTBL1A8MY62 500 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 CCDC188H7C350 402 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 TLR3O15455 904 aaKnown RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 C22orf31O95567 290 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 UNGP13051 313 aaPredicted RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 CYP2C19P33261 490 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 PHKA2P46019 1235 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 HUNKP57058 714 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 PTENP60484 403 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 RPL7AP62424 266 aaKnown RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 MBTD1Q05BQ5 628 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ZNF792Q3KQV3 632 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ATP13A4Q4VNC1 1196 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ODF2Q5BJF6 829 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 CEP85LQ5SZL2 805 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 LIN9Q5TKA1 542 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 DCUN1D2Q6PH85 259 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 ABRAQ8N0Z2 381 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 RNF25Q96BH1 459 aaPredicted RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 JPH2Q9BR39 696 aaPredicted RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 SYNCQ9H7C4 482 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 IFT122Q9HBG6 1241 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 DNAJC17Q9NVM6 304 aaKnown RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 CPSF3Q9UKF6 684 aaKnown RBP12.24□□□□□ -0.45
CUX1-202ENST00000292538 HES2Q9Y543 173 aa12.24□□□□□ -0.45
CUX1-202ENST00000292538 PARP14Q460N5 1801 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 KIAA0391O15091 583 aaKnown RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 ZBTB48P10074 688 aaPredicted RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 TBXAS1P24557 533 aaPredicted RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 JADE1Q6IE81 842 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 CCDC137Q6PK04 289 aaKnown RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 WDR49Q8IV35 697 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 KIAA0319LQ8IZA0 1049 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 ZDHHC14Q8IZN3 488 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 CCDC114Q96M63 670 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 PLAAQ9Y263 795 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 MIF4GDA9UHW6 222 aaKnown RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 CYP2B6P20813 491 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 HPDP32754 393 aaPredicted RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 CTNNA1P35221 906 aaKnown RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 CLDN10P78369 228 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 MCL1Q07820 350 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 DHX9Q08211 1270 aaKnown RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 PPP1R7Q15435 360 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 SGSM1Q2NKQ1 1148 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 MROH7Q68CQ1 1323 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 C11orf63Q6NUN7 778 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 NPLOC4Q8TAT6 608 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms