RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PLVAPQ9BX97 442 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 AZI2Q9H6S1 392 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 PCNTO95613 3336 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 ADCY3O60266 1144 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 NUDT17P0C025 328 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 TAS2R40P59535 323 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 CHADLQ6NUI6 762 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 C12orf50Q8NA57 414 aaPredicted RBP19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 EPS8L3Q8TE67 593 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 DDX27Q96GQ7 796 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 SPATC1LQ9H0A9 340 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 DNAJC17Q9NVM6 304 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 PARP2Q9UGN5 583 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 ASIC3Q9UHC3 531 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 MYBL1P10243 752 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 RALAP11233 206 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 CD58P19256 250 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 VPS41P49754 854 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 IFI35P80217 286 aaPredicted RBP19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 MAMLD1Q13495 774 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 SPDYCQ5MJ68 293 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 HOOK3Q86VS8 718 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 RIOX2Q8IUF8 465 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 TLCD1Q96CP7 247 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 KLHL11Q9NVR0 708 aa19.55■□□□□ 0.72
SHKBP1-201ENST00000291842 WDR90Q96KV7 1748 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 ADM5C9JUS6 153 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 ARIH2O95376 493 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 RFC5P40937 340 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 MAGEA9P43362 315 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 ZBTB10Q96DT7 871 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 TRIM11Q96F44 468 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 CCDC114Q96M63 670 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 MTMR12Q9C0I1 747 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 CD2APQ9Y5K6 639 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 TP73O15350 636 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 PROSCO94903 275 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 LIG3P49916 1009 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 CALCOCO2Q13137 446 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 LIN9Q5TKA1 542 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 ANKS1BQ7Z6G8 1248 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 RAPGEF5Q92565 580 aa19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 DDX23Q9BUQ8 820 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.54■□□□□ 0.72
SHKBP1-201ENST00000291842 IRF6O14896 467 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 RIPK2O43353 540 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 FAM107AO95990 144 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 GJB1P08034 283 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 SLC1A1P43005 524 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 HSDL1Q3SXM5 330 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 FAM160B1Q5W0V3 765 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 B4GALNT4Q76KP1 1039 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 CDR2LQ86X02 465 aaPredicted RBP19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 SEPT1Q8WYJ6 367 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 OTUD5Q96G74 571 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 TMEM134Q9H6X4 195 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 ELP3Q9H9T3 547 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 PPP2R3BQ9Y5P8 575 aa19.53■□□□□ 0.72
SHKBP1-201ENST00000291842 GMNCA6NCL1 334 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 TLR3O15455 904 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 TRAPPC3O43617 180 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 MAFO75444 373 aaPredicted RBP19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 OSTNP61366 133 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 RPL7AP62424 266 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 NEDD9Q14511 834 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 QPCTQ16769 361 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 ATP13A4Q4VNC1 1196 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 GPC2Q8N158 579 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 RNF149Q8NC42 400 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 TRAPPC12Q8WVT3 735 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 ZNF606Q8WXB4 792 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 RUNDC3BQ96NL0 473 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 SELENOSQ9BQE4 189 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 MSCO60682 206 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 DDNO94850 711 aaPredicted RBP19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 EDNRBP24530 442 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 GBP1P32455 592 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 CHKAP35790 457 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 MYL6P60660 151 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 IRX3P78415 501 aaPredicted RBP19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 PRUNE1Q86TP1 453 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 PWWP2AQ96N64 755 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 DCLK3Q9C098 648 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 TSPYL1Q9H0U9 437 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 CSADQ9Y600 493 aa19.52■□□□□ 0.72
SHKBP1-201ENST00000291842 RGS16O15492 202 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 ACSL3O95573 720 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 RARGP13631 454 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 TCF4P15884 667 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 TBXAS1P24557 533 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 LAMTOR4Q0VGL1 99 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 PTP4A2Q12974 167 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 TMEM63BQ5T3F8 832 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 SCARA5Q6ZMJ2 495 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 MOB2Q70IA6 237 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 CLMNQ96JQ2 1002 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 IMPG2Q9BZV3 1241 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 AAASQ9NRG9 546 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 PI4K2BG5E9Z4 385 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 FAM189A1O60320 539 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms