RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PASKQ96RG2 1323 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 TCHPQ9BT92 498 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 MAF1Q9H063 256 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 LRRC19Q9H756 370 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 PPANQ9NQ55 473 aaKnown RBP21.39■■□□□ 1.01
VPS53-201ENST00000291074 ADAM22Q9P0K1 906 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 ECEL1O95672 775 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 MYBL1P10243 752 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 GJC1P36383 396 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 FNTAP49354 379 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 IRX3P78415 501 aaPredicted RBP21.39■■□□□ 1.01
VPS53-201ENST00000291074 NEDD9Q14511 834 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 SLC29A2Q14542 456 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 DENND2CQ68D51 928 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 METTL7BQ6UX53 244 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 MOB2Q70IA6 237 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 SEPT1Q8WYJ6 367 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 DDX27Q96GQ7 796 aaKnown RBP21.39■■□□□ 1.01
VPS53-201ENST00000291074 FAM107BQ9H098 131 aa21.39■■□□□ 1.01
VPS53-201ENST00000291074 TAS2R40P59535 323 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 PPP2R2AP63151 447 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 KRT17Q04695 432 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 HSDL1Q3SXM5 330 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 ARFGAP2Q8N6H7 521 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 TRIM11Q96F44 468 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 FAM118BQ9BPY3 351 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 HEMGNQ9BXL5 484 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 MTMR12Q9C0I1 747 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 MGAMO43451 1857 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 FAM189A1O60320 539 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 MSCO60682 206 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 CORO7P57737 925 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 CCDC25Q86WR0 208 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 ZBTB10Q96DT7 871 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 MTRF1LQ9UGC7 380 aaKnown RBP21.38■■□□□ 1.01
VPS53-201ENST00000291074 USTQ9Y2C2 406 aa21.38■■□□□ 1.01
VPS53-201ENST00000291074 R3HDM2Q9Y2K5 976 aaKnown RBP21.38■■□□□ 1.01
VPS53-201ENST00000291074 CNMDO75829 334 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 PROSCO94903 275 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 NUDT17P0C025 328 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 TRIP13Q15645 432 aaPredicted RBP21.37■■□□□ 1.01
VPS53-201ENST00000291074 SPDYCQ5MJ68 293 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 BRSK2Q8IWQ3 736 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 ART4Q93070 314 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 ASCC2Q9H1I8 757 aaPredicted RBP21.37■■□□□ 1.01
VPS53-201ENST00000291074 TLDC2A0PJX2 215 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 E7EVH7 732 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 GJB1P08034 283 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 CD58P19256 250 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 EIF3BP55884 814 aaKnown RBP21.37■■□□□ 1.01
VPS53-201ENST00000291074 MAMLD1Q13495 774 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 TMEM63BQ5T3F8 832 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 NLRP14Q86W24 1093 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 CCDC50Q8IVM0 306 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 RNF149Q8NC42 400 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 TRAPPC12Q8WVT3 735 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 FGD4Q96M96 766 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 PLVAPQ9BX97 442 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 AZI2Q9H6S1 392 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 TXNRD2Q9NNW7 524 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 FAM169AQ9Y6X4 670 aa21.37■■□□□ 1.01
VPS53-201ENST00000291074 LAMTOR4Q0VGL1 99 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 MYCBPAPQ8TBZ2 947 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 IPO4Q8TEX9 1081 aaKnown RBP21.36■■□□□ 1.01
VPS53-201ENST00000291074 ZNF473Q8WTR7 871 aaKnown RBP21.36■■□□□ 1.01
VPS53-201ENST00000291074 CCDC113Q9H0I3 377 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 PARP2Q9UGN5 583 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 SOCS7O14512 581 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 TP73O15350 636 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 RALAP11233 206 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 TBXAS1P24557 533 aaPredicted RBP21.36■■□□□ 1.01
VPS53-201ENST00000291074 PTP4A2Q12974 167 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 ZNF394Q53GI3 561 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 LIN9Q5TKA1 542 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 CDR2LQ86X02 465 aaPredicted RBP21.36■■□□□ 1.01
VPS53-201ENST00000291074 TLCD1Q96CP7 247 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 CCT8L2Q96SF2 557 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 CNTN6Q9UQ52 1028 aa21.36■■□□□ 1.01
VPS53-201ENST00000291074 ZBTB42B2RXF5 422 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 SLC1A1P43005 524 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 SSR1P43307 286 aaKnown RBP21.35■■□□□ 1.01
VPS53-201ENST00000291074 MYL6P60660 151 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 ZPBP2Q6X784 338 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 ANKS1BQ7Z6G8 1248 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 GPR20Q99678 358 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 MRPL4Q9BYD3 311 aaKnown RBP21.35■■□□□ 1.01
VPS53-201ENST00000291074 KLHL11Q9NVR0 708 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 SBF1O95248 1867 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 EVPLQ92817 2033 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 TOM1L1O75674 476 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 GBP1P32455 592 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 TRIM72Q6ZMU5 477 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 MDM1Q8TC05 714 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 ZNF606Q8WXB4 792 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 COPS5Q92905 334 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 RUNDC3BQ96NL0 473 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 ASIC3Q9UHC3 531 aa21.35■■□□□ 1.01
VPS53-201ENST00000291074 ASS1P00966 412 aaKnown RBP21.34■■□□□ 1.01
VPS53-201ENST00000291074 PRKCBP05771 671 aa21.34■■□□□ 1.01
VPS53-201ENST00000291074 OSTNP61366 133 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms