RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 POLR2BP30876 1174 aaKnown RBP13.79□□□□□ -0.2
SS18-202ENST00000269138 VAMP7P51809 220 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 PDCD11Q14690 1871 aaKnown RBP13.79□□□□□ -0.2
SS18-202ENST00000269138 CCDC85BQ15834 202 aaPredicted RBP13.79□□□□□ -0.2
SS18-202ENST00000269138 TIGD5Q53EQ6 642 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 FAM171A1Q5VUB5 890 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 SASS6Q6UVJ0 657 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 ADGRD2Q7Z7M1 963 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 CSGALNACT2Q8N6G5 542 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 TMC2Q8TDI7 906 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 ANKRD36BP1Q96IX9 119 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 HERC2P3Q9BVR0 1158 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 ENTPD7Q9NQZ7 604 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 LMCD1Q9NZU5 365 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 AGAP1Q9UPQ3 857 aa13.79□□□□□ -0.2
SS18-202ENST00000269138 SF3B1O75533 1304 aaKnown RBP eCLIP13.78□□□□□ -0.24e-6■■■■■ 96
SS18-202ENST00000269138 C2CD2LO14523 706 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 TNNC2P02585 160 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 CTSAP10619 480 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 EPB41P11171 864 aaKnown RBP13.78□□□□□ -0.2
SS18-202ENST00000269138 LILRA4P59901 499 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 CLDN10P78369 228 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 TCEAL5Q5H9L2 206 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 FOXR2Q6PJQ5 311 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 TRAPPC11Q7Z392 1133 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 CEP57Q86XR8 500 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 SYAP1Q96A49 352 aaPredicted RBP13.78□□□□□ -0.2
SS18-202ENST00000269138 CEP63Q96MT8 703 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 MKNK1Q9BUB5 465 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 SRRTQ9BXP5 876 aaKnown RBP13.78□□□□□ -0.2
SS18-202ENST00000269138 CHST7Q9NS84 486 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 NUB1Q9Y5A7 615 aa13.78□□□□□ -0.2
SS18-202ENST00000269138 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.78□□□□□ -0.2
SS18-202ENST00000269138 PRRC2BQ5JSZ5 2229 aaKnown RBP13.77□□□□□ -0.2
SS18-202ENST00000269138 C2orf71A6NGG8 1288 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 SLC16A3O15427 465 aaKnown RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 LILRB3O75022 631 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 CST3P01034 146 aaPredicted RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 C4BPAP04003 597 aaKnown RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 KRT19P08727 400 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 KRT13P13646 458 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 TKTP29401 623 aaKnown RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 CA8P35219 290 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 GTF2F1P35269 517 aaKnown RBP eCLIP13.77□□□□□ -0.21
SS18-202ENST00000269138 RBP5P82980 135 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 BFSP1Q12934 665 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 PTPN14Q15678 1187 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 USP41Q3LFD5 358 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 RTP2Q5QGT7 225 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 KIAA0319Q5VV43 1072 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 PRSS55Q6UWB4 352 aaPredicted RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 C11orf57Q6ZUT1 292 aaPredicted RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 INTS8Q75QN2 995 aaKnown RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 FILIP1Q7Z7B0 1213 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 MRPL43Q8N983 215 aaKnown RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 PPM1EQ8WY54 764 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 SUSD3Q96L08 255 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 NGRNQ9NPE2 291 aaKnown RBP13.77□□□□□ -0.21
SS18-202ENST00000269138 ITGA11Q9UKX5 1188 aa13.77□□□□□ -0.21
SS18-202ENST00000269138 PER2O15055 1255 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 FGFR3P22607 806 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 ERCC5P28715 1186 aaPredicted RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 GCLMP48507 274 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 GLUD2P49448 558 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 AARSP49588 968 aaKnown RBP eCLIP13.76□□□□□ -0.21
SS18-202ENST00000269138 MCCD1P59942 119 aaPredicted RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 DSG1Q02413 1049 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 TYRO3Q06418 890 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 PPP3CAQ08209 521 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 ELAVL2Q12926 359 aaKnown RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 SMC1AQ14683 1233 aaKnown RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 STX1AQ16623 288 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 SKOR2Q2VWA4 1001 aaPredicted RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 TDRD10Q5VZ19 366 aaKnown RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 RBM23Q86U06 439 aaKnown RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 RIN2Q8WYP3 895 aaPredicted RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 ELMO3Q96BJ8 720 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 TTPALQ9BTX7 342 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 NSUN3Q9H649 340 aaKnown RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 MMRN2Q9H8L6 949 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 ANO10Q9NW15 660 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 DACH1Q9UI36 760 aa13.76□□□□□ -0.21
SS18-202ENST00000269138 TIMM13Q9Y5L4 95 aaPredicted RBP13.76□□□□□ -0.21
SS18-202ENST00000269138 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.75□□□□□ -0.21
SS18-202ENST00000269138 TRAPPC3O43617 180 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 VNN1O95497 513 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 URODP06132 367 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 TAF6P49848 677 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 HYAL1Q12794 435 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 BIRC3Q13489 604 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 CCDC40Q4G0X9 1142 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 PDE12Q6L8Q7 609 aaKnown RBP13.75□□□□□ -0.21
SS18-202ENST00000269138 KIAA1841Q6NSI8 718 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 DSTYKQ6XUX3 929 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.75□□□□□ -0.21
SS18-202ENST00000269138 SV2AQ7L0J3 742 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 IRF2BP1Q8IU81 584 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 SENP8Q96LD8 212 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 DNAJC25Q9H1X3 360 aa13.75□□□□□ -0.21
SS18-202ENST00000269138 IGFLR1Q9H665 355 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms