RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KIF12Q96FN5 646 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 WDR24Q96S15 920 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 ERVK-5Q9HDB9 667 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 DPP3Q9NY33 737 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 TRIM10Q9UDY6 481 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 DNAI1Q9UI46 699 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 OGDHLQ9ULD0 1010 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 INTUQ9ULD6 942 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 GUCA1BQ9UMX6 200 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 TFR2Q9UP52 801 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 HES2Q9Y543 173 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 IPPQ9Y573 584 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 CEP350Q5VT06 3117 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 KRT5P13647 590 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 CYP11B1P15538 503 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 CDK7P50613 346 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 RBP5P82980 135 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 MTFR1Q15390 333 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 NOP9Q86U38 636 aaKnown RBP15.13■□□□□ 0.01
SS18-201ENST00000269137 SLC47A2Q86VL8 602 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 DNAJC5GQ8N7S2 189 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 ZMAT2Q96NC0 199 aaKnown RBP15.13■□□□□ 0.01
SS18-201ENST00000269137 DEFB118Q96PH6 123 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 TRAIPQ9BWF2 469 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 TRPV6Q9H1D0 765 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 AGO3Q9H9G7 860 aaKnown RBP15.13■□□□□ 0.01
SS18-201ENST00000269137 BTNL10A8MVZ5 291 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 ITGB3P05106 788 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 KRT19P08727 400 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 CCL5P13501 91 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 KCNE1P15382 129 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 CHRNB2P17787 502 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 NFX1Q12986 1120 aaKnown RBP15.13■□□□□ 0.01
SS18-201ENST00000269137 LPIN1Q14693 890 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 ZNF569Q5MCW4 686 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 U2AF1L4Q8WU68 220 aaKnown RBP15.13■□□□□ 0.01
SS18-201ENST00000269137 SLC20A1Q8WUM9 679 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 DDX1Q92499 740 aaKnown RBP15.13■□□□□ 0.01
SS18-201ENST00000269137 PADI3Q9ULW8 664 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 PCDHB2Q9Y5E7 798 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 DUSP10Q9Y6W6 482 aa15.13■□□□□ 0.01
SS18-201ENST00000269137 FANCGO15287 622 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 H2AFZP0C0S5 128 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 AKAP5P24588 427 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 ASPAP45381 313 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 PDE6CP51160 858 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 ZNF132P52740 706 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 CDR2Q01850 454 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 PAK2Q13177 524 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 ZNF667Q5HYK9 610 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 ZNF618Q5T7W0 954 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 H2AFVQ71UI9 128 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 ZNF677Q86XU0 584 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 RPUSD2Q8IZ73 545 aaKnown RBP15.12■□□□□ 0.01
SS18-201ENST00000269137 RNF10Q8N5U6 811 aaKnown RBP15.12■□□□□ 0.01
SS18-201ENST00000269137 RNF208Q9H0X6 261 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 RNF39Q9H2S5 420 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 FAM124BQ9H5Z6 455 aaPredicted RBP15.12■□□□□ 0.01
SS18-201ENST00000269137 UBQLN1Q9UMX0 589 aaKnown RBP15.12■□□□□ 0.01
SS18-201ENST00000269137 PCDHB4Q9Y5E5 795 aa15.12■□□□□ 0.01
SS18-201ENST00000269137 PDCD11Q14690 1871 aaKnown RBP15.12■□□□□ 0.01
SS18-201ENST00000269137 CKBP12277 381 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 GZMAP12544 262 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 ZSCAN20P17040 1043 aaPredicted RBP15.11■□□□□ 0.01
SS18-201ENST00000269137 POLR2BP30876 1174 aaKnown RBP15.11■□□□□ 0.01
SS18-201ENST00000269137 CD52P31358 61 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 CASQ1P31415 396 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 YWHAEP62258 255 aaKnown RBP15.11■□□□□ 0.01
SS18-201ENST00000269137 DSC3Q14574 896 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 TRAF7Q6Q0C0 670 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 TMEM270Q6UE05 265 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 MRPL10Q7Z7H8 261 aaKnown RBP15.11■□□□□ 0.01
SS18-201ENST00000269137 HACE1Q8IYU2 909 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 BEST2Q8NFU1 509 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 SECISBP2LQ93073 1101 aaKnown RBP15.11■□□□□ 0.01
SS18-201ENST00000269137 HPDLQ96IR7 371 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 APOL6Q9BWW8 343 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 BCO2Q9BYV7 579 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 CXCL16Q9H2A7 254 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 ACP6Q9NPH0 428 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 FAM105AQ9NUU6 356 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 PARP2Q9UGN5 583 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 AGAP1Q9UPQ3 857 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 BRCA2P51587 3418 aa15.11■□□□□ 0.01
SS18-201ENST00000269137 SMIM28A0A1B0GU29 152 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 XPOTO43592 962 aaKnown RBP15.1■□□□□ 0.01
SS18-201ENST00000269137 ZNF623O75123 536 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 CLSTN1O94985 981 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 GHRP10912 638 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 P4HA1P13674 534 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 GUCY2FP51841 1108 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 FMO1Q01740 532 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 WDR72Q3MJ13 1102 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 SLC35F6Q8N357 371 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 RBBP8NLQ8NC74 664 aaPredicted RBP15.1■□□□□ 0.01
SS18-201ENST00000269137 CAGE1Q8TC20 777 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 PACSIN1Q9BY11 444 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 OSBPL7Q9BZF2 842 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 CYP3A43Q9HB55 503 aa15.1■□□□□ 0.01
SS18-201ENST00000269137 CISHQ9NSE2 258 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms