RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 YY1P25490 414 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 CPNE8Q86YQ8 564 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 ZMAT2Q96NC0 199 aaKnown RBP17.68■□□□□ 0.42
USP4-201ENST00000265560 SPC25Q9HBM1 224 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 LAMA3Q16787 3333 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 SCN1AP35498 2009 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 DPH6Q7L8W6 267 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 CAGE1Q8TC20 777 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 MTG1Q9BT17 334 aaPredicted RBP17.68■□□□□ 0.42
USP4-201ENST00000265560 XYLT2Q9H1B5 865 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 PLEKHA4Q9H4M7 779 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 SRRDQ9UH36 339 aa17.68■□□□□ 0.42
USP4-201ENST00000265560 ADAMTS4O75173 837 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 RHOXF2BP0C7M4 288 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 POLR2BP30876 1174 aaKnown RBP17.67■□□□□ 0.42
USP4-201ENST00000265560 PAPD7Q5XG87 772 aaKnown RBP17.67■□□□□ 0.42
USP4-201ENST00000265560 DAAM2Q86T65 1068 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 SESTD1Q86VW0 696 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 RBBP8NLQ8NC74 664 aaPredicted RBP17.67■□□□□ 0.42
USP4-201ENST00000265560 C18orf25Q96B23 403 aaPredicted RBP17.67■□□□□ 0.42
USP4-201ENST00000265560 CYFIP2Q96F07 1278 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 KIF12Q96FN5 646 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 RHOXF2Q9BQY4 288 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 Q9Y3F1 56 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 PPEF2O14830 753 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 B4GALT4O60513 344 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 CDR2Q01850 454 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 KATNAL1Q9BW62 490 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 CACNG4Q9UBN1 327 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 AGAP1Q9UPQ3 857 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 MEIS3P2A8K0S8 358 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 NAA35Q5VZE5 725 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 TPCN2Q8NHX9 752 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 CISHQ9NSE2 258 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 CTTNBP2NLQ9P2B4 639 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 SNX12Q9UMY4 172 aa17.67■□□□□ 0.42
USP4-201ENST00000265560 NOC2LQ9Y3T9 749 aaKnown RBP17.67■□□□□ 0.42
USP4-201ENST00000265560 GRIN2DO15399 1336 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 THAP12O43422 761 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 BUB1BO60566 1050 aaPredicted RBP17.66■□□□□ 0.42
USP4-201ENST00000265560 GNA15P30679 374 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 RNF10Q8N5U6 811 aaKnown RBP17.66■□□□□ 0.42
USP4-201ENST00000265560 OSBPL9Q96SU4 736 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 TRMT13Q9NUP7 481 aaKnown RBP17.66■□□□□ 0.42
USP4-201ENST00000265560 ZC3H11AO75152 810 aaKnown RBP eCLIP17.66■□□□□ 0.42
USP4-201ENST00000265560 BRD2P25440 801 aaKnown RBP17.66■□□□□ 0.42
USP4-201ENST00000265560 TMEM132DQ14C87 1099 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 SGSM1Q2NKQ1 1148 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 TRIM7Q9C029 511 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 SMYD3Q9H7B4 428 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 PARP2Q9UGN5 583 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 HMGXB4Q9UGU5 601 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 GTF2IRD1Q9UHL9 959 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 MROH7Q68CQ1 1323 aa17.66■□□□□ 0.42
USP4-201ENST00000265560 ZSCAN20P17040 1043 aaPredicted RBP17.65■□□□□ 0.42
USP4-201ENST00000265560 SLC27A1Q6PCB7 646 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 ZNF296Q8WUU4 475 aaPredicted RBP17.65■□□□□ 0.42
USP4-201ENST00000265560 GOLGA2P5Q9HBQ8 144 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 TUBGCP4Q9UGJ1 667 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 CDY2AQ9Y6F7 541 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 SCN10AQ9Y5Y9 1956 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 RECQL4O94761 1208 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 GJB6O95452 261 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 LLGL1Q15334 1064 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 C10orf76Q5T2E6 689 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 TWF2Q6IBS0 349 aaKnown RBP17.65■□□□□ 0.42
USP4-201ENST00000265560 NOTUMQ6P988 496 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 ZSWIM1Q9BR11 485 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 PCDHGC5Q9Y5F6 944 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 ASPAP45381 313 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 RABGGTAQ92696 567 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 NIF3L1Q9GZT8 377 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 SDCBP2Q9H190 292 aa17.65■□□□□ 0.42
USP4-201ENST00000265560 ANKRD62A6NC57 917 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 THPOP40225 353 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 C2orf54Q08AI8 447 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 DAB2IPQ5VWQ8 1189 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 TXLNBQ8N3L3 684 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 CCDC94Q9BW85 323 aaPredicted RBP17.64■□□□□ 0.41
USP4-201ENST00000265560 DPP3Q9NY33 737 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 PCDHB2Q9Y5E7 798 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 CTAGE15A4D2H0 777 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 KCNK3O14649 394 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 RTN2O75298 545 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 IL18RAPO95256 599 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 CTAGE8P0CG41 777 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 GNAT1P11488 350 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 IGFBP6P24592 240 aaPredicted RBP17.64■□□□□ 0.41
USP4-201ENST00000265560 AFF1P51825 1210 aaKnown RBP17.64■□□□□ 0.41
USP4-201ENST00000265560 IRF5Q13568 498 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 ENOSF1Q7L5Y1 443 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 CTAGE6Q86UF2 777 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 FAM228AQ86W67 206 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 CREG2Q8IUH2 290 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 CTAGE4Q8IX94 777 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 LRRC57Q8N9N7 239 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 SH3TC2Q8TF17 1288 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 ZNF653Q96CK0 615 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 ZFP42Q96MM3 310 aa17.64■□□□□ 0.41
USP4-201ENST00000265560 CELF4Q9BZC1 486 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms