RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 GLYCTKQ8IVS8 523 aa13.91□□□□□ -0.18
NUP54-201ENST00000264883 LRRC47Q8N1G4 583 aaKnown RBP13.91□□□□□ -0.18
NUP54-201ENST00000264883 UBL4BQ8N7F7 174 aa13.91□□□□□ -0.18
NUP54-201ENST00000264883 ARHGEF26Q96DR7 871 aa13.91□□□□□ -0.18
NUP54-201ENST00000264883 REEP2Q9BRK0 252 aa13.91□□□□□ -0.18
NUP54-201ENST00000264883 ANO3Q9BYT9 981 aa13.91□□□□□ -0.18
NUP54-201ENST00000264883 ANGPTL2Q9UKU9 493 aa13.91□□□□□ -0.18
NUP54-201ENST00000264883 WASF2Q9Y6W5 498 aa13.91□□□□□ -0.18
NUP54-201ENST00000264883 RASA4BC9J798 803 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 GYG2O15488 501 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 RASA4O43374 803 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 PABPC4LP0CB38 370 aaKnown RBP13.9□□□□□ -0.18
NUP54-201ENST00000264883 CASP5P51878 434 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 DSG1Q02413 1049 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 CACNB1Q02641 598 aaPredicted RBP13.9□□□□□ -0.18
NUP54-201ENST00000264883 SPARCL1Q14515 664 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 CTC1Q2NKJ3 1217 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 IZUMO2Q6UXV1 221 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 VPS52Q8N1B4 723 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 RIBC1Q8N443 379 aaPredicted RBP13.9□□□□□ -0.18
NUP54-201ENST00000264883 WDR60Q8WVS4 1066 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 MPP4Q96JB8 637 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 FAM20AQ96MK3 541 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 SYT11Q9BT88 431 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.9□□□□□ -0.18
NUP54-201ENST00000264883 ZNF646O15015 1829 aaPredicted RBP13.9□□□□□ -0.18
NUP54-201ENST00000264883 C2CD2LO14523 706 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 SPAG7O75391 227 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 KCNJ1P48048 391 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 CD151P48509 253 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 GTF2IP78347 998 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 MPP3Q13368 585 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 SEL1L2Q5TEA6 688 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 OLFML2BQ68BL8 750 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 RGS9BPQ6ZS82 235 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 STXBP4Q6ZWJ1 553 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 CATSPER3Q86XQ3 398 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 UBN1Q9NPG3 1134 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 DNAJC17Q9NVM6 304 aaKnown RBP13.9□□□□□ -0.18
NUP54-201ENST00000264883 WHRNQ9P202 907 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 MTUS1Q9ULD2 1270 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 SUGT1Q9Y2Z0 365 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 ALG6Q9Y672 507 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 FRMPD4Q14CM0 1322 aa13.9□□□□□ -0.18
NUP54-201ENST00000264883 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.89□□□□□ -0.19
NUP54-201ENST00000264883 FAM170AA1A519 330 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 MUTP22033 750 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 HOXD13P35453 343 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 SPIRE1Q08AE8 756 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 THOC5Q13769 683 aaKnown RBP13.89□□□□□ -0.19
NUP54-201ENST00000264883 CYP1B1Q16678 543 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.89□□□□□ -0.19
NUP54-201ENST00000264883 GJB7Q6PEY0 223 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 POTEGQ6S5H5 508 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 SCYL3Q8IZE3 742 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 ETNPPLQ8TBG4 499 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 KRT35Q92764 455 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 POP1Q99575 1024 aaKnown RBP13.89□□□□□ -0.19
NUP54-201ENST00000264883 ECSITQ9BQ95 431 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 POLR3CQ9BUI4 534 aaPredicted RBP13.89□□□□□ -0.19
NUP54-201ENST00000264883 YIPF2Q9BWQ6 316 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 IQCGQ9H095 443 aaKnown RBP13.89□□□□□ -0.19
NUP54-201ENST00000264883 COG5Q9UP83 839 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 TNFAIP3P21580 790 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 SERPINB3P29508 390 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 MARCKSL1P49006 195 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 HPCAP84074 193 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 PPP2R5CQ13362 524 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 TTLL12Q14166 644 aaPredicted RBP13.89□□□□□ -0.19
NUP54-201ENST00000264883 TMED2Q15363 201 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 PDK4Q16654 411 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 P3H1Q32P28 736 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 CFAP157Q5JU67 520 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 CC2D2BQ6DHV5 1058 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 FAM186BQ8IYM0 893 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 CERS5Q8N5B7 392 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 PDCD7Q8N8D1 485 aaKnown RBP13.89□□□□□ -0.19
NUP54-201ENST00000264883 OLIG1Q8TAK6 271 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 SLX1AQ9BQ83 275 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 TUBB6Q9BUF5 446 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 THAP2Q9H0W7 228 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 SEL1LQ9UBV2 794 aa13.89□□□□□ -0.19
NUP54-201ENST00000264883 A0A0J9YVX5 310 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 TCRBV7S2A1N4TA0A589 114 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 A8MXQ7 604 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 TP73O15350 636 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 FOSP01100 380 aaPredicted RBP13.88□□□□□ -0.19
NUP54-201ENST00000264883 HNRNPCP07910 306 aaKnown RBP eCLIP13.88□□□□□ -0.19
NUP54-201ENST00000264883 AKR1B1P15121 316 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 POLD1P28340 1107 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 CBX3Q13185 183 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 KIF22Q14807 665 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 DOK7Q18PE1 504 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 TMEM63BQ5T3F8 832 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 CCDC174Q6PII3 467 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 PODNQ7Z5L7 613 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 PPP2R3CQ969Q6 453 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 PPP1R14BQ96C90 147 aa13.88□□□□□ -0.19
NUP54-201ENST00000264883 NMD3Q96D46 503 aaKnown RBP13.88□□□□□ -0.19
NUP54-201ENST00000264883 PTCD3Q96EY7 689 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms