RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 TLR3O15455 904 aaKnown RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 HADHQ16836 314 aaKnown RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 ZNF568Q3ZCX4 644 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 ZNF394Q53GI3 561 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 ABHD15Q6UXT9 468 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 SCARA5Q6ZMJ2 495 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 RNF168Q8IYW5 571 aaPredicted RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 MGARPQ8TDB4 240 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 BSNDQ8WZ55 320 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 SEMA4DQ92854 862 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 SH3GL3Q99963 347 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 HEMGNQ9BXL5 484 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 GPRC5DQ9NZD1 345 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 NDC80O14777 642 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 PDHA1P08559 390 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 TCF7P36402 384 aaPredicted RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 ALDH5A1P51649 535 aaPredicted RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 MAGOHP61326 146 aaKnown RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 PPP2R2AP63151 447 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 ZNF699Q32M78 642 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 PMM2O15305 246 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 MED7O43513 233 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 KRT1P04264 644 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 FAM133BQ5BKY9 247 aaKnown RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 AGBL2Q5U5Z8 902 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 ERICH1Q86X53 443 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 PALB2Q86YC2 1186 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 TRPM4Q8TD43 1214 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 ATP8B4Q8TF62 1192 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 CGRRF1Q99675 332 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 NTPCRQ9BSD7 190 aaKnown RBP17.3■□□□□ 0.36
CTCF-201ENST00000264010 ACP6Q9NPH0 428 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 QSER1Q2KHR3 1735 aa17.3■□□□□ 0.36
CTCF-201ENST00000264010 RASGRF2O14827 1237 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 COILP38432 576 aaPredicted RBP17.29■□□□□ 0.36
CTCF-201ENST00000264010 FMO1Q01740 532 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 PPATQ06203 517 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 KDM7AQ6ZMT4 941 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 SPATC1LQ9H0A9 340 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 PORCNQ9H237 461 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 PARVAQ9NVD7 372 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 IP6K2Q9UHH9 426 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 ZNF214Q9UL59 606 aaPredicted RBP17.29■□□□□ 0.36
CTCF-201ENST00000264010 ADAMTSL1Q8N6G6 1762 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 IFNAR2P48551 515 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 GUCY1A3Q02108 690 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 TRIP13Q15645 432 aaPredicted RBP17.29■□□□□ 0.36
CTCF-201ENST00000264010 CCDC63Q8NA47 563 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 ZSWIM2Q8NEG5 633 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 KRT35Q92764 455 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 C18orf8Q96DM3 657 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 WNK4Q96J92 1243 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 ZNF408Q9H9D4 720 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 KLC4Q9NSK0 619 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 MDH1P40925 334 aaKnown RBP17.29■□□□□ 0.36
CTCF-201ENST00000264010 FNTAP49354 379 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 NLRP11P59045 1033 aaKnown RBP17.29■□□□□ 0.36
CTCF-201ENST00000264010 TTLL4Q14679 1199 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 GPC2Q8N158 579 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 CCDC89Q8N998 374 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 RBM41Q96IZ5 413 aaKnown RBP17.29■□□□□ 0.36
CTCF-201ENST00000264010 LBHD1Q9BQE6 289 aaPredicted RBP17.29■□□□□ 0.36
CTCF-201ENST00000264010 ADPGKQ9BRR6 497 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 STRA6Q9BX79 667 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 MAF1Q9H063 256 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 NKIRAS1Q9NYS0 192 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 AKT3Q9Y243 479 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 STXBP5LQ9Y2K9 1186 aa17.29■□□□□ 0.36
CTCF-201ENST00000264010 GOLGA8SH3BPF8 625 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 AGPSO00116 658 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 GAS2O43903 313 aaKnown RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 TGFB3P10600 412 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 EAPPQ56P03 285 aaPredicted RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 ELMO3Q96BJ8 720 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 PCDHB18PQ96TA0 734 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 MAK16Q9BXY0 300 aaKnown RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 TMBIM4Q9HC24 238 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 RNF181Q9P0P0 153 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 USP20Q9Y2K6 914 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 SCN9AQ15858 1988 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 DDX3YO15523 660 aaKnown RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 AP1G2O75843 785 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 CDC25CP30307 473 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 SSTR3P32745 418 aaPredicted RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 GHRHRQ02643 423 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 ZNF667Q5HYK9 610 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 IQCKQ8N0W5 287 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 PRPF31Q8WWY3 499 aaKnown RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 CCDC97Q96F63 343 aaPredicted RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 IFNB1P01574 187 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 CYP1A2P05177 515 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 ADSSP30520 456 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 KCNJ1P48048 391 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 CAV1Q03135 178 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 TMCO4Q5TGY1 634 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 FASTKD5Q7L8L6 764 aaKnown RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 CD302Q8IX05 232 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 GINS2Q9Y248 185 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 PCDHA3Q9Y5H8 950 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 BRWD3Q6RI45 1802 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms