RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CCDC188H7C350 402 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 NDC80O14777 642 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 NCK2O43639 380 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 LGR5O75473 907 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 RGS20O76081 388 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 ATP1A1P05023 1023 aaKnown RBP12.33□□□□□ -0.44
VPS4A-201ENST00000254950 GHRP10912 638 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 EEF1DP3Q658K8 133 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 SLC35G2Q8TBE7 412 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 RSAD2Q8WXG1 361 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 CYP3A43Q9HB55 503 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 SEPT4O43236 478 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 CCL14Q16627 93 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 MMS22LQ6ZRQ5 1243 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 PDZD4Q76G19 769 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-201ENST00000254950 ARHGEF19Q8IW93 802 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 UBLCP1Q8WVY7 318 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-201ENST00000254950 PRDM5Q9NQX1 630 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-201ENST00000254950 ITGA11Q9UKX5 1188 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 NRXN2Q9P2S2 1712 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-201ENST00000254950 LACTBL1A8MY62 500 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 E7EVH7 732 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 C2orf54Q08AI8 447 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 FAM102AQ5T9C2 384 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-201ENST00000254950 CALN1Q9BXU9 219 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 RNF208Q9H0X6 261 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 ASNSD1Q9NWL6 643 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 SNX12Q9UMY4 172 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 PCDHA2Q9Y5H9 948 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 RGPD3A6NKT7 1758 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-201ENST00000254950 RGPD4Q7Z3J3 1758 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 CCDC66A2RUB6 948 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 CNMDO75829 334 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 FGGP02679 453 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 PDGFRBP09619 1106 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 GZMAP12544 262 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 GUCY2DQ02846 1103 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 LMNB2Q03252 620 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 PRKCZQ05513 592 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 HAUS1Q96CS2 278 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 MS4A4AQ96JQ5 239 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 ZBED2Q9BTP6 218 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 WNT8AQ9H1J5 351 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 CISHQ9NSE2 258 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 FBXL5Q9UKA1 691 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 GTF3C4Q9UKN8 822 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 MROH7Q68CQ1 1323 aa12.32□□□□□ -0.44
VPS4A-201ENST00000254950 EPHB6O15197 1021 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 ATG7O95352 703 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 ATP2A2P16615 1042 aaKnown RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 BRD2P25440 801 aaKnown RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 SDC4P31431 198 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 CDO1Q16878 200 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 NBPF20Q3BBV1 942 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 RFX6Q8HWS3 928 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 DYDC1Q8WWB3 177 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 RBM41Q96IZ5 413 aaKnown RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 MFSD14AQ96MC6 490 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 CELF4Q9BZC1 486 aaKnown RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 LACRTQ9GZZ8 138 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 GANQ9H2C0 597 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 DPH5Q9H2P9 285 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 HOMER3Q9NSC5 361 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 TFR2Q9UP52 801 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 CDY2AQ9Y6F7 541 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 PASKQ96RG2 1323 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 SOCS7O14512 581 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 B4GALT5O43286 388 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 PCSK1P29120 753 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 VPS41P49754 854 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 RAB27AP51159 221 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 MRPS6P82932 125 aaKnown RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 ZACNQ401N2 412 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 CEP57Q86XR8 500 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 DMAC2Q9NW81 257 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 KIAA1257Q9ULG3 409 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 PACSIN2Q9UNF0 486 aaPredicted RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 MRFAP1Q9Y605 127 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 AOC2O75106 756 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 HEXIM1O94992 359 aaKnown RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 THP07101 528 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 CRYBB1P53674 252 aaPredicted RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 CBX1P83916 185 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 ACAD10Q6JQN1 1059 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 SCN4BQ8IWT1 228 aa12.31□□□□□ -0.44
VPS4A-201ENST00000254950 LENG1Q96BZ8 264 aaPredicted RBP12.31□□□□□ -0.44
VPS4A-201ENST00000254950 SNAI1O95863 264 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-201ENST00000254950 MMEP08473 750 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 KRT3P12035 628 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 ARF4P18085 180 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-201ENST00000254950 GNL1P36915 607 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-201ENST00000254950 ARL4AP40617 200 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 ATN1P54259 1190 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-201ENST00000254950 RHOT1Q8IXI2 618 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 KCTD6Q8NC69 237 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 RNF139Q8WU17 664 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 FAM49BQ9NUQ9 324 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 TLDC2A0PJX2 215 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms