RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 PccaQ91ZA3 724 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Sec22bO08547 215 aaKnown RBP12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rrp36Q3UFY0 244 aaKnown RBP12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Sgsm1Q8BPQ7 1093 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Trpc7Q9WVC5 862 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ptch1Q61115 1434 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Mcf2lQ64096 1149 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Acot5Q6Q2Z6 421 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Scn3bQ8BHK2 215 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 PolrmtQ8BKF1 1207 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ttc26Q8BS45 554 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Caap1Q8VDY9 356 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm21488A0A087WR99 222 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm13023A2A8N2 498 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm3252E9PUT9 216 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm2956E9PVJ0 216 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm3002E9PW72 216 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm3468E9QAJ8 216 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm8108K7N734 216 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm3739L7N296 216 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm3164L7N2B9 238 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm3488M0QW81 238 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Hsd17b4P51660 735 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Psmc5P62196 406 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 NpeppsQ11011 920 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ankrd23Q812A3 306 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 AbraQ8BUZ1 375 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Taf2Q8C176 1104 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 A430089I19RikQ8C9W1 407 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 UvragQ8K245 698 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Mettl7bQ9DD20 244 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Zcchc7B1AX39 541 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Pou4f1P17208 421 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cyp2c37P56654 490 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Usp13Q5BKP2 858 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Slitrk2Q810C0 846 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Fam20aQ8CID3 541 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Stard7Q8R1R3 373 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ubxn2aQ99KJ0 258 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Trpv2Q9WTR1 756 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm8267E9Q207 261 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Hdac10Q6P3E7 666 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Haus3Q8QZX2 570 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Q91WD4 421 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Zfp277E9Q6D6 583 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 MycP01108 439 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Lire1P11260 357 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Mxi1P50540 228 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cyfip1Q7TMB8 1253 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cwf19l2Q8BG79 887 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cpa5Q8R4H4 436 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Dnajc28Q8VCE1 385 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 H2afyQ9QZQ8 372 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Nrg3O35181 713 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Kpnb1P70168 876 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 OsbpQ3B7Z2 805 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Pitpnm3Q3UHE1 974 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Pramel6Q810Y9 485 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 DcpsQ9DAR7 338 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Extl3Q9WVL6 918 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Kank3Q9Z1P7 791 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Arhgap23Q69ZH9 1483 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm1141B9EJU1 475 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Nudt18Q3U2V3 323 aa12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Xpo1Q6P5F9 1071 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 McamQ8R2Y2 648 aaKnown RBP12.49□□□□□ -0.41
Trim56-201ENSMUST00000054384 Prkaa1Q5EG47 559 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Vil1Q62468 827 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Sf3b3Q921M3 1217 aaKnown RBP12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Stx11Q9D3G5 287 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 SmapQ9R0P4 181 aaKnown RBP12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Eps8Q08509 821 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ccnt2Q7TQK0 723 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Eif3dO70194 548 aaKnown RBP12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cyp3a13Q64464 503 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 RetsatQ64FW2 609 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tspyl5Q69ZB3 406 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Sgo2Q7TSY8 1164 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Mtrf1Q8K126 446 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Pglyrp2Q8VCS0 530 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Agap3Q8VHH5 910 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ndufb9Q9CQJ8 179 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 YwhabQ9CQV8 246 aaKnown RBP12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Spag6Q9JLI7 507 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Trp53inp1Q9QXE4 239 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Skint11A7XV14 364 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 WapP01173 134 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tas2r131Q7M708 310 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Nmrk1Q91W63 195 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tgm5Q9D7I9 724 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Atp13a1Q9EPE9 1200 aaKnown RBP12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rhbdl2A2AGA4 302 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cdc25aP48964 514 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rab6bP61294 208 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Armcx5Q3UZB0 606 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Psmd12Q9D8W5 456 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Krt42Q6IFX2 452 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Bbs2Q9CWF6 721 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Efna5O08543 228 aa12.48□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rgs4O08899 205 aa12.48□□□□□ -0.41
Retrieved 100 of 22,080 RNA–protein pairs in 35.8 ms