RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	RCN1	P36054	211 aa		0.94	□□□□□ -2.26
RTR1	YER139C	CAF4	P36130	643 aa		0.94	□□□□□ -2.26
RTR1	YER139C	SKG1	P36169	355 aa		0.94	□□□□□ -2.26
RTR1	YER139C	SEC72	P39742	193 aa	Known RBP	0.94	□□□□□ -2.26
RTR1	YER139C	YER189W	P40104	122 aa		0.94	□□□□□ -2.26
RTR1	YER139C	ARC15	P40518	154 aa	RIP-Chip data	0.94	□□□□□ -2.26	not detected
RTR1	YER139C	IRC18	P47056	224 aa		0.94	□□□□□ -2.26
RTR1	YER139C	YJL027C	P47063	138 aa	Predicted RBP	0.94	□□□□□ -2.26
RTR1	YER139C	MCM22	P47167	239 aa		0.94	□□□□□ -2.26
RTR1	YER139C	BXI1	P48558	297 aa		0.94	□□□□□ -2.26
RTR1	YER139C	MIC26	P50087	233 aa		0.94	□□□□□ -2.26
RTR1	YER139C	BRR6	P53062	197 aa		0.94	□□□□□ -2.26
RTR1	YER139C	MRH4	P53166	561 aa		0.94	□□□□□ -2.26
RTR1	YER139C	ALG13	P53178	202 aa		0.94	□□□□□ -2.26
RTR1	YER139C	YGR026W	P53217	278 aa		0.94	□□□□□ -2.26
RTR1	YER139C	YML096W	Q04489	525 aa		0.94	□□□□□ -2.26
RTR1	YER139C	FAR8	Q05040	523 aa		0.94	□□□□□ -2.26
RTR1	YER139C	INM2	Q05533	292 aa		0.94	□□□□□ -2.26
RTR1	YER139C	ABP140	Q08641	628 aa	Known RBP	0.94	□□□□□ -2.26
RTR1	YER139C	BBP1	Q12365	385 aa		0.94	□□□□□ -2.26
RTR1	YER139C	DCN1	Q12395	269 aa		0.94	□□□□□ -2.26
RTR1	YER139C	EMP46	Q12396	444 aa		0.94	□□□□□ -2.26
RTR1	YER139C	MHT1	Q12525	324 aa		0.94	□□□□□ -2.26
RTR1	YER139C	HTL1	Q9URQ5	78 aa		0.94	□□□□□ -2.26
RTR1	YER139C	CHD1	P32657	1468 aa		0.93	□□□□□ -2.26
RTR1	YER139C	YLR462W	O13556	202 aa		0.93	□□□□□ -2.26
RTR1	YER139C	RPL25	P04456	142 aa	Known RBP	0.93	□□□□□ -2.26
RTR1	YER139C	SGA1	P08019	549 aa		0.93	□□□□□ -2.26
RTR1	YER139C	GCN3	P14741	305 aa		0.93	□□□□□ -2.26
RTR1	YER139C	ATP7	P30902	174 aa		0.93	□□□□□ -2.26
RTR1	YER139C	VPS51	P36116	164 aa		0.93	□□□□□ -2.26
RTR1	YER139C	IKI1	P38874	309 aa		0.93	□□□□□ -2.26
RTR1	YER139C	AST2	P39945	430 aa	Known RBP	0.93	□□□□□ -2.26
RTR1	YER139C	YEL075C	P39972	122 aa		0.93	□□□□□ -2.26
RTR1	YER139C	RMD6	P39975	231 aa		0.93	□□□□□ -2.26
RTR1	YER139C	FCY21	P40039	528 aa		0.93	□□□□□ -2.26
RTR1	YER139C	FIS1	P40515	155 aa		0.93	□□□□□ -2.26
RTR1	YER139C	SNX4	P47057	423 aa		0.93	□□□□□ -2.26
RTR1	YER139C	HAM1	P47119	197 aa	Known RBP	0.93	□□□□□ -2.26
RTR1	YER139C	RMR1	P53060	241 aa		0.93	□□□□□ -2.26
RTR1	YER139C	YGL034C	P53186	121 aa		0.93	□□□□□ -2.26
RTR1	YER139C	ABF2	Q02486	183 aa		0.93	□□□□□ -2.26
RTR1	YER139C	YDR248C	Q03786	193 aa		0.93	□□□□□ -2.26
RTR1	YER139C	SEI1	Q06058	285 aa		0.93	□□□□□ -2.26
RTR1	YER139C	YET3	Q07451	203 aa		0.93	□□□□□ -2.26
RTR1	YER139C	YOR186W	Q08560	144 aa		0.93	□□□□□ -2.26
RTR1	YER139C	YKL183C-A	Q3E765	70 aa		0.93	□□□□□ -2.26
RTR1	YER139C	LSO2	Q3E772	92 aa	Known RBP	0.93	□□□□□ -2.26
RTR1	YER139C	YOR020W-A	Q3E824	90 aa		0.93	□□□□□ -2.26
RTR1	YER139C	SWI1	P09547	1314 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YDR157W	A0A023PZE8	133 aa		0.92	□□□□□ -2.26
RTR1	YER139C	CDC28	P00546	298 aa	Known RBP	0.92	□□□□□ -2.26
RTR1	YER139C	Q0255	P03881	472 aa		0.92	□□□□□ -2.26
RTR1	YER139C	SPT3	P06844	337 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YHR032W-A	P0C5N6	59 aa		0.92	□□□□□ -2.26
RTR1	YER139C	DSF1	P0CX08	502 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YNR073C	P0CX09	502 aa		0.92	□□□□□ -2.26
RTR1	YER139C	SNA3	P14359	133 aa		0.92	□□□□□ -2.26
RTR1	YER139C	FBA1	P14540	359 aa	Known RBP	0.92	□□□□□ -2.26
RTR1	YER139C	FCY2	P17064	533 aa		0.92	□□□□□ -2.26
RTR1	YER139C	RPO26	P20435	155 aa		0.92	□□□□□ -2.26
RTR1	YER139C	DBF2	P22204	572 aa		0.92	□□□□□ -2.26
RTR1	YER139C	SEC22	P22214	214 aa		0.92	□□□□□ -2.26
RTR1	YER139C	TRX3	P25372	127 aa		0.92	□□□□□ -2.26
RTR1	YER139C	ERG24	P32462	438 aa	Known RBP	0.92	□□□□□ -2.26
RTR1	YER139C	SPS18	P32572	300 aa		0.92	□□□□□ -2.26
RTR1	YER139C	PTM1	P32857	523 aa		0.92	□□□□□ -2.26
RTR1	YER139C	NTF2	P33331	125 aa	Known RBP	0.92	□□□□□ -2.26
RTR1	YER139C	YBR096W	P38256	230 aa		0.92	□□□□□ -2.26
RTR1	YER139C	DOG2	P38773	246 aa		0.92	□□□□□ -2.26
RTR1	YER139C	DOG1	P38774	246 aa		0.92	□□□□□ -2.26
RTR1	YER139C	RTC3	P38804	111 aa	Predicted RBP	0.92	□□□□□ -2.26
RTR1	YER139C	YAR068W	P39564	161 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YER034W	P40022	185 aa	Known RBP	0.92	□□□□□ -2.26
RTR1	YER139C	BMT5	P40493	336 aa		0.92	□□□□□ -2.26
RTR1	YER139C	RSM25	P40496	264 aa		0.92	□□□□□ -2.26
RTR1	YER139C	CAT5	P41735	233 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YFR054C	P43622	192 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YJR056C	P47115	236 aa		0.92	□□□□□ -2.26
RTR1	YER139C	CWC23	P52868	283 aa	Predicted RBP	0.92	□□□□□ -2.26
RTR1	YER139C	MMS2	P53152	137 aa		0.92	□□□□□ -2.26
RTR1	YER139C	PRM8	P53174	237 aa		0.92	□□□□□ -2.26
RTR1	YER139C	PDR17	P53844	350 aa		0.92	□□□□□ -2.26
RTR1	YER139C	RSM10	Q03201	203 aa		0.92	□□□□□ -2.26
RTR1	YER139C	ATG39	Q06159	398 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YLR036C	Q07986	203 aa		0.92	□□□□□ -2.26
RTR1	YER139C	TPO4	Q12256	659 aa		0.92	□□□□□ -2.26
RTR1	YER139C	YPR170W-B	P0C5R9	85 aa		0.91	□□□□□ -2.26
RTR1	YER139C	RAD51	P25454	400 aa		0.91	□□□□□ -2.26
RTR1	YER139C	ATG22	P25568	528 aa		0.91	□□□□□ -2.26
RTR1	YER139C	RFA3	P26755	122 aa	Known RBP	0.91	□□□□□ -2.26
RTR1	YER139C	ASF2	P32448	525 aa	Predicted RBP	0.91	□□□□□ -2.26
RTR1	YER139C	YKL075C	P36083	450 aa		0.91	□□□□□ -2.26
RTR1	YER139C	MSA2	P36157	363 aa		0.91	□□□□□ -2.26
RTR1	YER139C	YCR087C-A	P37263	153 aa		0.91	□□□□□ -2.26
RTR1	YER139C	YBR063C	P38083	404 aa		0.91	□□□□□ -2.26
RTR1	YER139C	URA8	P38627	578 aa	Predicted RBP	0.91	□□□□□ -2.26
RTR1	YER139C	EGD2	P38879	174 aa	Known RBP	0.91	□□□□□ -2.26
RTR1	YER139C	SRP14	P38985	146 aa		0.91	□□□□□ -2.26
RTR1	YER139C	AIM2	P39721	246 aa		0.91	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms