RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 KLHL5Q96PQ7 755 aa29■■■□□ 2.23
VEGFA-231ENST00000640499 CDCA3Q99618 268 aaPredicted RBP29■■■□□ 2.23
VEGFA-231ENST00000640499 KCTD10Q9H3F6 313 aa29■■■□□ 2.23
VEGFA-231ENST00000640499 ASB7Q9H672 318 aa29■■■□□ 2.23
VEGFA-231ENST00000640499 HSPBP1Q9NZL4 362 aa29■■■□□ 2.23
VEGFA-231ENST00000640499 H3BQ06 376 aaPredicted RBP28.99■■■□□ 2.23
VEGFA-231ENST00000640499 I3L4J1 428 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 C2CD2LO14523 706 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 CLIC2O15247 247 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 CNPP09543 421 aaKnown RBP28.99■■■□□ 2.23
VEGFA-231ENST00000640499 BRCC3P46736 316 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 FAM171A1Q5VUB5 890 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 SPATA1Q5VX52 437 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 BRSK2Q8IWQ3 736 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 GADD45GIP1Q8TAE8 222 aaPredicted RBP28.99■■■□□ 2.23
VEGFA-231ENST00000640499 SPATA20Q8TB22 786 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 SLC22A17Q8WUG5 538 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 FBXL18Q96ME1 805 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 TSPAN18Q96SJ8 248 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 RXFP1Q9HBX9 757 aa28.99■■■□□ 2.23
VEGFA-231ENST00000640499 MRPL17Q9NRX2 175 aaKnown RBP28.99■■■□□ 2.23
VEGFA-231ENST00000640499 UBQLN1Q9UMX0 589 aaKnown RBP28.99■■■□□ 2.23
VEGFA-231ENST00000640499 SF3B1O75533 1304 aaKnown RBP eCLIP28.98■■■□□ 2.236e-7■■■■■ 31.1
VEGFA-231ENST00000640499 PPEF2O14830 753 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 PRPF40AO75400 957 aaKnown RBP28.98■■■□□ 2.23
VEGFA-231ENST00000640499 CYP3A5P20815 502 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 GLUD2P49448 558 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 KCNQ1P51787 676 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 USP41Q3LFD5 358 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 SCARA3Q6AZY7 606 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 TMEM184AQ6ZMB5 413 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 CBWD2Q8IUF1 395 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 ELOA2Q8IYF1 753 aaPredicted RBP28.98■■■□□ 2.23
VEGFA-231ENST00000640499 GPD1LQ8N335 351 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 FAM84AQ96KN4 292 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 ASB2Q96Q27 587 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 DERAQ9Y315 318 aa28.98■■■□□ 2.23
VEGFA-231ENST00000640499 LDHAP00338 332 aaKnown RBP28.97■■■□□ 2.23
VEGFA-231ENST00000640499 FGFR3P22607 806 aa28.97■■■□□ 2.23
VEGFA-231ENST00000640499 CA8P35219 290 aa28.97■■■□□ 2.23
VEGFA-231ENST00000640499 SNRPFP62306 86 aaKnown RBP28.97■■■□□ 2.23
VEGFA-231ENST00000640499 MRPS5P82675 430 aaKnown RBP28.97■■■□□ 2.23
VEGFA-231ENST00000640499 LEXMQ3ZCV2 418 aa28.97■■■□□ 2.23
VEGFA-231ENST00000640499 EP400NLQ6ZTU2 488 aa28.97■■■□□ 2.23
VEGFA-231ENST00000640499 C12orf56Q8IXR9 622 aa28.97■■■□□ 2.23
VEGFA-231ENST00000640499 MSLNLQ96KJ4 702 aa28.97■■■□□ 2.23
VEGFA-231ENST00000640499 RBAKQ9NYW8 714 aaPredicted RBP28.97■■■□□ 2.23
VEGFA-231ENST00000640499 BARX2Q9UMQ3 279 aaPredicted RBP28.97■■■□□ 2.23
VEGFA-231ENST00000640499 PCDHA5Q9Y5H7 936 aa28.97■■■□□ 2.23
VEGFA-231ENST00000640499 KIAA0391O15091 583 aaKnown RBP28.96■■■□□ 2.23
VEGFA-231ENST00000640499 URODP06132 367 aa28.96■■■□□ 2.23
VEGFA-231ENST00000640499 BMP1P13497 986 aa28.96■■■□□ 2.23
VEGFA-231ENST00000640499 UBE2HP62256 183 aa28.96■■■□□ 2.23
VEGFA-231ENST00000640499 TMEM132DQ14C87 1099 aa28.96■■■□□ 2.23
VEGFA-231ENST00000640499 PRSS55Q6UWB4 352 aaPredicted RBP28.96■■■□□ 2.23
VEGFA-231ENST00000640499 LNX1Q8TBB1 728 aaPredicted RBP28.96■■■□□ 2.23
VEGFA-231ENST00000640499 RIN2Q8WYP3 895 aaPredicted RBP28.96■■■□□ 2.23
VEGFA-231ENST00000640499 MAPK8IP1Q9UQF2 711 aa28.96■■■□□ 2.23
VEGFA-231ENST00000640499 C2CD2Q9Y426 696 aa28.96■■■□□ 2.23
VEGFA-231ENST00000640499 HCFC2Q9Y5Z7 792 aa28.96■■■□□ 2.23
VEGFA-231ENST00000640499 TEX28O15482 410 aa28.95■■■□□ 2.22
VEGFA-231ENST00000640499 IL18RAPO95256 599 aa28.95■■■□□ 2.22
VEGFA-231ENST00000640499 BMS1Q14692 1282 aaKnown RBP28.95■■■□□ 2.22
VEGFA-231ENST00000640499 LLGL2Q6P1M3 1020 aa28.95■■■□□ 2.22
VEGFA-231ENST00000640499 GPR65Q8IYL9 337 aa28.95■■■□□ 2.22
VEGFA-231ENST00000640499 TTPALQ9BTX7 342 aa28.95■■■□□ 2.22
VEGFA-231ENST00000640499 PDE11AQ9HCR9 933 aa28.95■■■□□ 2.22
VEGFA-231ENST00000640499 DMAC2Q9NW81 257 aa28.95■■■□□ 2.22
VEGFA-231ENST00000640499 PIRO00625 290 aa28.94■■■□□ 2.22
VEGFA-231ENST00000640499 RPL17P18621 184 aaKnown RBP28.94■■■□□ 2.22
VEGFA-231ENST00000640499 CEP57Q86XR8 500 aa28.94■■■□□ 2.22
VEGFA-231ENST00000640499 SMYD4Q8IYR2 804 aaPredicted RBP28.94■■■□□ 2.22
VEGFA-231ENST00000640499 PTPRJQ12913 1337 aa28.94■■■□□ 2.22
VEGFA-231ENST00000640499 VCANP13611 3396 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 ANO9A1A5B4 782 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 EPCAMP16422 314 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 TKTP29401 623 aaKnown RBP28.93■■■□□ 2.22
VEGFA-231ENST00000640499 CYP2J2P51589 502 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 ELAVL2Q12926 359 aaKnown RBP28.93■■■□□ 2.22
VEGFA-231ENST00000640499 CLUL1Q15846 466 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 C9orf57Q5W0N0 161 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 KIAA1841Q6NSI8 718 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 PDZRN4Q6ZMN7 1036 aaPredicted RBP28.93■■■□□ 2.22
VEGFA-231ENST00000640499 HS2ST1Q7LGA3 356 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 RDH13Q8NBN7 331 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 BEST2Q8NFU1 509 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 CXorf38Q8TB03 319 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 NOC3LQ8WTT2 800 aaKnown RBP28.93■■■□□ 2.22
VEGFA-231ENST00000640499 TMEM174Q8WUU8 243 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 PIK3R5Q8WYR1 880 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 CCDC47Q96A33 483 aaKnown RBP28.93■■■□□ 2.22
VEGFA-231ENST00000640499 GSDMAQ96QA5 445 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 GZF1Q9H116 711 aaPredicted RBP28.93■■■□□ 2.22
VEGFA-231ENST00000640499 CGNQ9P2M7 1197 aaKnown RBP28.93■■■□□ 2.22
VEGFA-231ENST00000640499 SSX2IPQ9Y2D8 614 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 PLXNA3P51805 1871 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 SCN1AP35498 2009 aa28.93■■■□□ 2.22
VEGFA-231ENST00000640499 ZNF233A6NK53 670 aa28.92■■■□□ 2.22
VEGFA-231ENST00000640499 AARSP49588 968 aaKnown RBP eCLIP28.92■■■□□ 2.221e-6■■■■□ 20.6
VEGFA-231ENST00000640499 NDUFV1P49821 464 aa28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms