RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CASTOR2A6NHX0 329 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 VWA5AO00534 786 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 NDUFB5O43674 189 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CREB3O43889 395 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 GARTP22102 1010 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 DGKEP52429 567 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 NRLP54845 237 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PHEXP78562 749 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 LAMB3Q13751 1172 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 KAZNQ674X7 775 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 B4GALNT4Q76KP1 1039 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF410Q86VK4 478 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 UNC45BQ8IWX7 931 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 DEFB123Q8N688 67 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC51Q96ER9 411 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ANKEF1Q9NU02 776 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ASNSD1Q9NWL6 643 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 MROH2AA6NES4 1674 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 UBE4BO95155 1302 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SCNN1BP51168 640 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ANKS6Q68DC2 871 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SERPINA13PQ6UXR4 307 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CHMP1BQ7LBR1 199 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PEX26Q7Z412 305 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 IFNLR1Q8IU57 520 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 GMCL1Q96IK5 515 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 NUSAP1Q9BXS6 441 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 INTS2Q9H0H0 1204 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CATSPERBQ9H7T0 1116 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ANLNQ9NQW6 1124 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 EMILIN3Q9NT22 766 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CDV3Q9UKY7 258 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PCDHB3Q9Y5E6 796 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SLIT1O75093 1534 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ERICH4A6NGS2 130 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 LGR5O75473 907 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 OCM2P0CE71 109 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 OCMP0CE72 109 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 IFNAR1P17181 557 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PTPN14Q15678 1187 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 WDR72Q3MJ13 1102 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PDE12Q6L8Q7 609 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CYB5D1Q6P9G0 228 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CATSPERGQ6ZRH7 1159 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC170Q8IYT3 715 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 MTA3Q9BTC8 594 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 GPR88Q9GZN0 384 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 FANCEQ9HB96 536 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 RICTORQ6R327 1708 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 MYO7AQ13402 2215 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 LTBP3Q9NS15 1303 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 COL14A1Q05707 1796 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CTAGE9A4FU28 777 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SGPL1O95470 568 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PHBP35232 272 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ERVK-21P61565 698 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 KLC3Q6P597 504 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ANKLE1Q8NAG6 615 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SUN3Q8TAQ9 357 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ATP8B4Q8TF62 1192 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 RSPH1Q8WYR4 309 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SENP1Q9P0U3 644 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ZMYM5Q9UJ78 669 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 AMFRQ9UKV5 643 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 INO80Q9ULG1 1556 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PTPRUQ92729 1446 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ARHGAP10A1A4S6 786 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 H3BM21 787 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 H3BRJ5 948 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CYB561D2O14569 222 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NFATC1O95644 943 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SYF2O95926 243 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CSF1RP07333 972 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PYGMP11217 842 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 LCP1P13796 627 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 STAT4Q14765 748 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PPP6R3Q5H9R7 873 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 MFN1Q8IWA4 741 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 GPD1LQ8N335 351 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SLC7A14Q8TBB6 771 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ACDQ96AP0 544 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NT5C1AQ9BXI3 368 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PDGFDQ9GZP0 370 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 UNC45AQ9H3U1 944 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ECT2Q9H8V3 914 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 GDPD2Q9HCC8 539 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 TNFSF13BQ9Y275 285 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SLC30A1Q9Y6M5 507 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 DNM1LO00429 736 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 AFPP02771 609 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 KRT3P12035 628 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 KRT15P19012 456 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 MYL5Q02045 173 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ALX1Q15699 326 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC184Q52MB2 194 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 OTOP1Q7RTM1 612 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 APLFQ8IW19 511 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SDCCAG3Q96C92 435 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 KRT12Q99456 494 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 TEX12Q9BXU0 123 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms