RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	AJAP1	Q9UKB5	411 aa	Predicted RBP	12.68	□□□□□ -0.38
CLN6-223	ENST00000637823	EPN1	Q9Y6I3	576 aa	Predicted RBP	12.68	□□□□□ -0.38
CLN6-223	ENST00000637823	TDRD15	B5MCY1	1934 aa	Known RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	SSU72P8	A0A1W2PR75	194 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823		F8VZ95	297 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	FOXN3	O00409	490 aa	Predicted RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	PITPNM1	O00562	1244 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	CCP110	O43303	1012 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	PQBP1	O60828	265 aa	Known RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	ZNF623	O75123	536 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	RECQL4	O94761	1208 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	ASS1	P00966	412 aa	Known RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	NFIC	P08651	508 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	ITGA4	P13612	1032 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	KCNE1	P15382	129 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	AKAP5	P24588	427 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	CYLC1	P35663	651 aa	Predicted RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	PRKCI	P41743	596 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	KLHL30	Q0D2K2	578 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	ZBTB6	Q15916	424 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	ARHGAP44	Q17R89	818 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	E4F1	Q66K89	784 aa	Predicted RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	HGSNAT	Q68CP4	663 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	RAD9B	Q6WBX8	426 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	LRRC8D	Q7L1W4	858 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	KIF12	Q96FN5	646 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	FAXDC2	Q96IV6	333 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	PI4K2A	Q9BTU6	479 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	TMEM106C	Q9BVX2	250 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	APOL6	Q9BWW8	343 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	DPP3	Q9NY33	737 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	ITGA11	Q9UKX5	1188 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	HES2	Q9Y543	173 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	KIAA0100	Q14667	2235 aa	Known RBP	12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	SCN1A	P35498	2009 aa		12.67	□□□□□ -0.38
CLN6-223	ENST00000637823	SCN5A	Q14524	2016 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	ZSCAN12	O43309	604 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	XPOT	O43592	962 aa	Known RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	ZNF500	O60304	480 aa	Predicted RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	PARN	O95453	639 aa	Known RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	TBXAS1	P24557	533 aa	Predicted RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	ATIC	P31939	592 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	EIF4A3	P38919	411 aa	Known RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	ATN1	P54259	1190 aa	Predicted RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	MYL6	P60660	151 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	RBP5	P82980	135 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	TLE2	Q04725	743 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	MBTPS1	Q14703	1052 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	MTF1	Q14872	753 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	CCAR2	Q8N163	923 aa	Known RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	C1orf127	Q8N9H9	656 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	BEST2	Q8NFU1	509 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	SHC3	Q92529	594 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	CCDC42	Q96M95	316 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	KREMEN1	Q96MU8	473 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	ADAM2	Q99965	735 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	GPR88	Q9GZN0	384 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	RNF39	Q9H2S5	420 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	PRDM10	Q9NQV6	1147 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.66	□□□□□ -0.38	5e-7	■■■■■ 90.8
CLN6-223	ENST00000637823	ARHGAP20	Q9P2F6	1191 aa		12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	R3HCC1	Q9Y3T6	440 aa	Known RBP	12.66	□□□□□ -0.38
CLN6-223	ENST00000637823	TANC1	Q9C0D5	1861 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823		A0A0U1RQF3	1178 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	SMIM28	A0A1B0GU29	152 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	EIF3CL	B5ME19	914 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	MGEA5	O60502	916 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	GFPT2	O94808	682 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	NDUFA10	O95299	355 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	ANXA13	P27216	316 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	NOP14	P78316	857 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	ARID5A	Q03989	594 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	FAAP100	Q0VG06	881 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	TDRD12	Q587J7	1177 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	TOGARAM2	Q6ZUX3	1019 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	FAM71A	Q8IYT1	594 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	CXorf38	Q8TB03	319 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	DIS3L	Q8TF46	1054 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	PGBD4	Q96DM1	585 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	ZMAT2	Q96NC0	199 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	EIF3C	Q99613	913 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	FTHL17	Q9BXU8	183 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	IFIH1	Q9BYX4	1025 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	XYLT2	Q9H1B5	865 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	C11orf49	Q9H6J7	331 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	APOBEC3G	Q9HC16	384 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	UBN1	Q9NPG3	1134 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	RGS18	Q9NS28	235 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	KLK14	Q9P0G3	267 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	SIX4	Q9UIU6	781 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	UBQLN1	Q9UMX0	589 aa	Known RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	PPP2R2C	Q9Y2T4	447 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	GIT1	Q9Y2X7	761 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	NUB1	Q9Y5A7	615 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	ADGRG1	Q9Y653	693 aa		12.65	□□□□□ -0.38
CLN6-223	ENST00000637823	TET1	Q8NFU7	2136 aa		12.64	□□□□□ -0.39
CLN6-223	ENST00000637823	AKR1B10	O60218	316 aa		12.64	□□□□□ -0.39
CLN6-223	ENST00000637823	EVI5	O60447	810 aa		12.64	□□□□□ -0.39

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