RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	VARS	P26640	1264 aa	Known RBP	11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	SREBF1	P36956	1147 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	RNASEL	Q05823	741 aa	Known RBP	11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	STRN3	Q13033	797 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	TNFAIP1	Q13829	316 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	RCN1	Q15293	331 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	KHDC1	Q4VXA5	237 aa	Known RBP	11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	ZCWPW2	Q504Y3	356 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	CFAP157	Q5JU67	520 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	CGB2	Q6NT52	195 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	GUF1	Q8N442	669 aa	Known RBP	11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	DGCR14	Q96DF8	476 aa	Known RBP	11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	ABHD8	Q96I13	439 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	FAM20A	Q96MK3	541 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	LRRC37B	Q96QE4	947 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	FAIM	Q9NVQ4	179 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	CEP72	Q9P209	647 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	DNAJB4	Q9UDY4	337 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	AMACR	Q9UHK6	382 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	HAO1	Q9UJM8	370 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	ZBTB21	Q9ULJ3	1066 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	SSX2IP	Q9Y2D8	614 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	TMX2	Q9Y320	296 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	NR2E3	Q9Y5X4	410 aa		11.44	□□□□□ -0.58
CHD2-223	ENST00000636306	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	FER1L6	Q2WGJ9	1857 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	TMEM120B	A0PK00	339 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306		A8MXQ7	604 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	TCP10L2	B9ZVM9	353 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	PIK3CD	O00329	1044 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ENTPD5	O75356	428 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ZWINT	O95229	277 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ALDH2	P05091	517 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	UBTFL6	P0CB48	400 aa	Predicted RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	POR	P16435	677 aa	Predicted RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	EPHB2	P29323	1055 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	SERPINB3	P29508	390 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	MTTP	P55157	894 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	PTEN	P60484	403 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ARHGAP4	P98171	946 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	MAP3K10	Q02779	954 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ADCY1	Q08828	1119 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	KCNMA1	Q12791	1236 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	DCTN2	Q13561	401 aa	Known RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	SLC29A2	Q14542	456 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	TDRD12	Q587J7	1177 aa	Known RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	B3GNT6	Q6ZMB0	384 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	PPP1R21	Q6ZMI0	780 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ARHGEF18	Q6ZSZ5	1173 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	SYCE1	Q8N0S2	351 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	SDR16C5	Q8N3Y7	309 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	METTL13	Q8N6R0	699 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	PDCD7	Q8N8D1	485 aa	Known RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ERP27	Q96DN0	273 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	PNMA5	Q96PV4	448 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	TGS1	Q96RS0	853 aa	Known RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	ARPC5L	Q9BPX5	153 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	AP1M1	Q9BXS5	423 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	KIAA1683	Q9H0B3	1180 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	MMRN2	Q9H8L6	949 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	R3HDM2	Q9Y2K5	976 aa	Known RBP	11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	RABGAP1	Q9Y3P9	1069 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	PCDHAC2	Q9Y5I4	1007 aa		11.43	□□□□□ -0.58
CHD2-223	ENST00000636306	BRCA1	P38398	1863 aa	Known RBP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	TRIM43B	A6NCK2	446 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	POTEM	A6NI47	508 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	RAD17	O75943	681 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	SPATA31D3	P0C874	917 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	T-ENOL	P0DO92	83 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	DPEP1	P16444	411 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	RPS12	P25398	132 aa	Known RBP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	ANXA13	P27216	316 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	DNA2	P51530	1060 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	NPEPPS	P55786	919 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	HDAC4	P56524	1084 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	TTLL12	Q14166	644 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	TNIP1	Q15025	636 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	PDCD4	Q53EL6	469 aa	Known RBP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	ANKRD40	Q6AI12	368 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	POTEA	Q6S8J7	498 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	VSTM1	Q6UX27	236 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	SPATA31D4	Q6ZUB0	917 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	ACAD11	Q709F0	780 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	SLFN11	Q7Z7L1	901 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	CROCCP3	Q8IVE0	287 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	MYOCD	Q8IZQ8	938 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	SAMD3	Q8N6K7	520 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	LRRC57	Q8N9N7	239 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	DQX1	Q8TE96	717 aa	Known RBP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	AGBL1	Q96MI9	1066 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	TCHP	Q9BT92	498 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	EIF2A	Q9BY44	585 aa	Known RBP	11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	BLOC1S4	Q9NUP1	217 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	PIM2	Q9P1W9	311 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	BTBD7	Q9P203	1132 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	CHKB	Q9Y259	395 aa		11.42	□□□□□ -0.58
CHD2-223	ENST00000636306	KANSL1L	A0AUZ9	987 aa		11.41	□□□□□ -0.58
CHD2-223	ENST00000636306	HTR3E	A5X5Y0	456 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms