RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FAM213AQ9BRX8 229 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 HSPBP1Q9NZL4 362 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 UVRAGQ9P2Y5 699 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 COG5Q9UP83 839 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 CFLARO15519 480 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 DDX3YO15523 660 aaKnown RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 KRT36O76013 467 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 CHRM1P11229 460 aaPredicted RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 RRM1P23921 792 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 PTPN4P29074 926 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 PRELPP51888 382 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 DYNC1I2Q13409 638 aaKnown RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 TRPC3Q13507 836 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 PCNX4Q63HM2 1172 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 RBBP8NLQ8NC74 664 aaPredicted RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 MTBPQ96DY7 904 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 TTC25Q96NG3 672 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 LRRC4BQ9NT99 713 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 WHRNQ9P202 907 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 PCSK1NQ9UHG2 260 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 NFAT5O94916 1531 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 GH2P01242 217 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 FGRP09769 529 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 ZSCAN5DPP0CG00 497 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 AP2B1P63010 937 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 GRAPQ13588 217 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 GRAPLQ8TC17 118 aaPredicted RBP11.67□□□□□ -0.54
CLN3-244ENST00000636147 MKNK1Q9BUB5 465 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 EBF2Q9HAK2 575 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 RHBDL2Q9NX52 303 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 GTF3C4Q9UKN8 822 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 SLC12A3P55017 1021 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 BPIFB4P59827 614 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 UBAP2Q5T6F2 1119 aaKnown RBP11.67□□□□□ -0.54
CLN3-244ENST00000636147 ZDHHC24Q6UX98 284 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 FAM111AQ96PZ2 611 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 FAF1Q9UNN5 650 aaPredicted RBP11.67□□□□□ -0.54
CLN3-244ENST00000636147 DAGLAQ9Y4D2 1042 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 SPDYE5A6NIY4 337 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 BTNL10A8MVZ5 291 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 STAMBPO95630 424 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 VCAM1P19320 739 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 ADRA1DP25100 572 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 RPA3P35244 121 aaPredicted RBP11.67□□□□□ -0.54
CLN3-244ENST00000636147 DLG4P78352 724 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 BTKQ06187 659 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 COBLL1Q53SF7 1204 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 OLFML2BQ68BL8 750 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 FBXL13Q8NEE6 735 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 ACAP3Q96P50 834 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 KIFC3Q9BVG8 833 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 MOV10L1Q9BXT6 1211 aaKnown RBP11.67□□□□□ -0.54
CLN3-244ENST00000636147 PSMC3IPQ9P2W1 217 aaPredicted RBP11.67□□□□□ -0.54
CLN3-244ENST00000636147 NKX1-2Q9UD57 310 aaPredicted RBP11.67□□□□□ -0.54
CLN3-244ENST00000636147 CHMP2BQ9UQN3 213 aa11.67□□□□□ -0.54
CLN3-244ENST00000636147 IQANK1A0A1B0GTG1 560 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 IPO5O00410 1097 aaKnown RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 STAM2O75886 525 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 PSMC4P43686 418 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 DRG2P55039 364 aaKnown RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 GPSM2P81274 684 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 SH2D4BQ5SQS7 431 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 IZUMO2Q6UXV1 221 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 CRLF3Q8IUI8 442 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 ARID3BQ8IVW6 561 aaPredicted RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 TRIM11Q96F44 468 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 HIC2Q96JB3 615 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 MANSC1Q9H8J5 431 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 DBNDD1Q9H9R9 158 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 ZDHHC18Q9NUE0 388 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 GRHL1Q9NZI5 618 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 ZMYND8Q9ULU4 1186 aaPredicted RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 LOC100653049A0A140TA62 436 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 LRRIQ4A6NIV6 560 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 F5H423 210 aaPredicted RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 EML1O00423 815 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 KRT34O76011 436 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 PECAM1P16284 738 aaPredicted RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 SERPINB3P29508 390 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 DCAF12L1Q5VU92 463 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 DARS2Q6PI48 645 aaKnown RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 SCARA5Q6ZMJ2 495 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 CBWD2Q8IUF1 395 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 MAB21L3Q8N8X9 362 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 ATP11CQ8NB49 1132 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 PPP4R1Q8TF05 950 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 FAM84AQ96KN4 292 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 C12orf65Q9H3J6 166 aaKnown RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 SLC5A4Q9NY91 659 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 SENP1Q9P0U3 644 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 SEL1LQ9UBV2 794 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 LRCH1Q9Y2L9 728 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 ASTN1O14525 1302 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 LRRC37A3O60309 1634 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 DENND3A2RUS2 1198 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 NT5C2P49902 561 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 ATXN3P54252 364 aaPredicted RBP11.66□□□□□ -0.54
CLN3-244ENST00000636147 NBPF20Q3BBV1 942 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 NXNQ6DKJ4 435 aa11.66□□□□□ -0.54
CLN3-244ENST00000636147 NOP9Q86U38 636 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms