RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 IKZF4Q9H2S9 585 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 RMND1Q9NWS8 449 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 ANKRD63C9JTQ0 380 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 SOD2P04179 222 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 KCNB1Q14721 858 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 KYAT1Q16773 422 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 PTPN21Q16825 1174 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 SEZ6Q53EL9 994 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 EPM2AIP1Q7L775 607 aaPredicted RBP19.72■□□□□ 0.75
CLN3-243ENST00000635973 COLGALT2Q8IYK4 626 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 SLC22A17Q8WUG5 538 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 SCFD1Q8WVM8 642 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 KLHL5Q96PQ7 755 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 VN1R3Q9BXE9 311 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 HAPLN2Q9GZV7 340 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 KCNH6Q9H252 994 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 POMKQ9H5K3 350 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 SFXN1Q9H9B4 322 aa19.72■□□□□ 0.75
CLN3-243ENST00000635973 AGO2Q9UKV8 859 aaKnown RBP19.72■□□□□ 0.75
CLN3-243ENST00000635973 A0A0B4J269 797 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 OGTO15294 1046 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 RHOBTB3O94955 611 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 KIF20AO95235 890 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 CLTAP09496 248 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 WEE2P0C1S8 567 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 SIGLEC14Q08ET2 396 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 GRIK3Q13003 919 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 STK4Q13043 487 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 ARMCX5Q6P1M9 558 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 TMC5Q6UXY8 1006 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 HS2ST1Q7LGA3 356 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 ALYREFQ86V81 257 aaKnown RBP19.71■□□□□ 0.75
CLN3-243ENST00000635973 KIAA0895Q8NCT3 520 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 ZNF507Q8TCN5 953 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 NOC3LQ8WTT2 800 aaKnown RBP19.71■□□□□ 0.75
CLN3-243ENST00000635973 ERCC4Q92889 916 aaPredicted RBP19.71■□□□□ 0.75
CLN3-243ENST00000635973 FBXL18Q96ME1 805 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 HERC2P3Q9BVR0 1158 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 DPP7Q9UHL4 492 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 CDH22Q9UJ99 828 aa19.71■□□□□ 0.75
CLN3-243ENST00000635973 TULP1O00294 542 aaPredicted RBP19.7■□□□□ 0.74
CLN3-243ENST00000635973 INPPL1O15357 1258 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 ADH1AP07327 375 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 CNPP09543 421 aaKnown RBP19.7■□□□□ 0.74
CLN3-243ENST00000635973 GLUD2P49448 558 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 GLRA4Q5JXX5 417 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 BMP8AQ7Z5Y6 402 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 ELOA2Q8IYF1 753 aaPredicted RBP19.7■□□□□ 0.74
CLN3-243ENST00000635973 TDRD5Q8NAT2 981 aaKnown RBP19.7■□□□□ 0.74
CLN3-243ENST00000635973 RPF1Q9H9Y2 349 aaKnown RBP19.7■□□□□ 0.74
CLN3-243ENST00000635973 LMBRD1Q9NUN5 540 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 MIOSQ9NXC5 875 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 STYXL1Q9Y6J8 313 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 TECTAO75443 2155 aa19.7■□□□□ 0.74
CLN3-243ENST00000635973 MYO10Q9HD67 2058 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 THP07101 528 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 CXCL8P10145 99 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 GARTP22102 1010 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 TNFSF9P41273 254 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 CLCN4P51793 760 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 PPP2R3AQ06190 1150 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 DSC1Q08554 894 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 KNOP1Q1ED39 458 aaKnown RBP19.69■□□□□ 0.74
CLN3-243ENST00000635973 BMT2Q1RMZ1 405 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 FAM212AQ96EL1 285 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 SNX27Q96L92 541 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 GSDMAQ96QA5 445 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 MARCH5Q9NX47 278 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 PCDHA5Q9Y5H7 936 aa19.69■□□□□ 0.74
CLN3-243ENST00000635973 PIEZO1Q92508 2521 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 C2CD4DB7Z1M9 353 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 PTGESO14684 152 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 ADSSP30520 456 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 ACOT2P49753 483 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 MTMR3Q13615 1198 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 CAMK4Q16566 473 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 ZBTB41Q5SVQ8 909 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 PLCD3Q8N3E9 789 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 KREMEN2Q8NCW0 462 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 ACSF2Q96CM8 615 aaPredicted RBP19.68■□□□□ 0.74
CLN3-243ENST00000635973 SAAL1Q96ER3 474 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 CBWD1Q9BRT8 395 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 PCIF1Q9H4Z3 704 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 AGPAT3Q9NRZ7 376 aa19.68■□□□□ 0.74
CLN3-243ENST00000635973 TADA2AO75478 443 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 HOXD13P35453 343 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 TAS1R1Q7RTX1 841 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 FBXL6Q8N531 539 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 GSTCDQ8NEC7 633 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 GOLGA5Q8TBA6 731 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 FAM213AQ9BRX8 229 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 SLC38A7Q9NVC3 462 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 CNTN3Q9P232 1028 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 SORCS3Q9UPU3 1222 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 MAPK8IP1Q9UQF2 711 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 PLXNA3P51805 1871 aa19.67■□□□□ 0.74
CLN3-243ENST00000635973 CITO14578 2027 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 GOLGA8IPA6NC78 632 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 CASTOR2A6NHX0 329 aa19.66■□□□□ 0.74
CLN3-243ENST00000635973 GOLGA8JA6NMD2 632 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms