RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ADAM2Q99965 735 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 LSM14BQ9BX40 385 aaKnown RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 INTS2Q9H0H0 1204 aaKnown RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 WNT8AQ9H1J5 351 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 GANQ9H2C0 597 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 RNF39Q9H2S5 420 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 RGS18Q9NS28 235 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 FAM207AQ9NSI2 230 aaPredicted RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 RAB20Q9NX57 234 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 CNTN3Q9P232 1028 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 AKR1B15C9JRZ8 316 aaPredicted RBP15.24■□□□□ 0.03
CLN3-242ENST00000635958 EPHB6O15197 1021 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 RECQL4O94761 1208 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 SKIP12755 728 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 CASP14P31944 242 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 FAM189BP81408 668 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 NAA30Q147X3 362 aaPredicted RBP15.24■□□□□ 0.03
CLN3-242ENST00000635958 LMBRD2Q68DH5 695 aaPredicted RBP15.24■□□□□ 0.03
CLN3-242ENST00000635958 TRAPPC11Q7Z392 1133 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 RTN4RL1Q86UN2 441 aaPredicted RBP15.24■□□□□ 0.03
CLN3-242ENST00000635958 HACE1Q8IYU2 909 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 TAS1R2Q8TE23 839 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 SEMA4DQ92854 862 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 TMEM39AQ9NV64 488 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 CEP72Q9P209 647 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 MFAP3LO75121 409 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 ZC3H11AO75152 810 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLN3-242ENST00000635958 VNN1O95497 513 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 ACTN1P12814 892 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 UCHL3P15374 230 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 KCNE1P15382 129 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 CASQ1P31415 396 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 ZBED6P86452 979 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 TEX35Q5T0J7 233 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 JADE1Q6IE81 842 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 CNGA4Q8IV77 575 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 GPR161Q8N6U8 529 aaKnown RBP15.24■□□□□ 0.03
CLN3-242ENST00000635958 APBB2Q92870 758 aa15.24■□□□□ 0.03
CLN3-242ENST00000635958 BAG1Q99933 345 aaPredicted RBP15.24■□□□□ 0.03
CLN3-242ENST00000635958 LUC7L2Q9Y383 392 aaKnown RBP15.24■□□□□ 0.03
CLN3-242ENST00000635958 C9IYK1 514 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 RBAK-RBAKDNI3L0D1 243 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 KIAA0355O15063 1070 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 NFICP08651 508 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 AKAP5P24588 427 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 SLC24A5Q71RS6 500 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 ZNF598Q86UK7 904 aaKnown RBP15.23■□□□□ 0.03
CLN3-242ENST00000635958 CXorf38Q8TB03 319 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 CPLX3Q8WVH0 158 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 BAP1Q92560 729 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 SEPT8Q92599 483 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 ANKRD36BP1Q96IX9 119 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 FAM84AQ96KN4 292 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 PANX2Q96RD6 677 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 MTMR12Q9C0I1 747 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 TSPYL2Q9H2G4 693 aaPredicted RBP15.23■□□□□ 0.03
CLN3-242ENST00000635958 APEX2Q9UBZ4 518 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 PPP2R2CQ9Y2T4 447 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 GIT1Q9Y2X7 761 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 TRIP11Q15643 1979 aa15.23■□□□□ 0.03
CLN3-242ENST00000635958 LRRN2O75325 713 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 HLA-DRAP01903 254 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TNNC2P02585 160 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TMEM191BP0C7N4 346 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 ITGA4P13612 1032 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 RFX1P22670 979 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 CYP2C18P33260 490 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 RFC2P35250 354 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 KRT9P35527 623 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 ADKP55263 362 aaKnown RBP15.22■□□□□ 0.03
CLN3-242ENST00000635958 TFAMQ00059 246 aaKnown RBP15.22■□□□□ 0.03
CLN3-242ENST00000635958 APBA1Q02410 837 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TMEM132DQ14C87 1099 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 ERCC6LQ2NKX8 1250 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 ARHGAP29Q52LW3 1261 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 PHLDB3Q6NSJ2 640 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 DBF4BQ8NFT6 615 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 OR8K1Q8NGG5 319 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 LINC01599Q8WXQ3 324 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 ZMAT2Q96NC0 199 aaKnown RBP15.22■□□□□ 0.03
CLN3-242ENST00000635958 DNAJC7Q99615 494 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 CXCL16Q9H2A7 254 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 C1orf112Q9NSG2 853 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 PARP2Q9UGN5 583 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 MYO6Q9UM54 1294 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 RALGAPA2Q2PPJ7 1873 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TET1Q8NFU7 2136 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TANC1Q9C0D5 1861 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 SMIM28A0A1B0GU29 152 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TNRC18O15417 2968 aaPredicted RBP15.22■□□□□ 0.03
CLN3-242ENST00000635958 TADA3O75528 432 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 EOMESO95936 686 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TIMP1P01033 207 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 CST3P01034 146 aaPredicted RBP15.22■□□□□ 0.03
CLN3-242ENST00000635958 ATF7P17544 494 aaPredicted RBP15.22■□□□□ 0.03
CLN3-242ENST00000635958 FECHP22830 423 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 CCL23P55773 120 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 POLR2FP61218 127 aaKnown RBP15.22■□□□□ 0.03
CLN3-242ENST00000635958 BIRC3Q13489 604 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 NCOA4Q13772 614 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms