RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TTC26A0AVF1 554 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 C19orf67A6NJJ6 358 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 BIN1O00499 593 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 LINC01565O15544 149 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 MEFVO15553 781 aaPredicted RBP19.63■□□□□ 0.73
CLN3-239ENST00000628023 XPOTO43592 962 aaKnown RBP19.63■□□□□ 0.73
CLN3-239ENST00000628023 TBX10O75333 385 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 MBD3O95983 291 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 IRS1P35568 1242 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 RBM23Q86U06 439 aaKnown RBP19.63■□□□□ 0.73
CLN3-239ENST00000628023 TMEM173Q86WV6 379 aaPredicted RBP19.63■□□□□ 0.73
CLN3-239ENST00000628023 ZSWIM2Q8NEG5 633 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 RABGGTAQ92696 567 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 IGSF21Q96ID5 467 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 ZMAT2Q96NC0 199 aaKnown RBP19.63■□□□□ 0.73
CLN3-239ENST00000628023 TLE6Q9H808 572 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 KIAA1586Q9HCI6 787 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 TLR9Q9NR96 1032 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 ATG2AQ2TAZ0 1938 aa19.63■□□□□ 0.73
CLN3-239ENST00000628023 PDXKO00764 312 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 EXOC3O60645 756 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 IL18RAPO95256 599 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 POU5F1Q01860 360 aaKnown RBP19.62■□□□□ 0.73
CLN3-239ENST00000628023 PLCB3Q01970 1234 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 TMEM132DQ14C87 1099 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 CRELD2Q6UXH1 353 aaPredicted RBP19.62■□□□□ 0.73
CLN3-239ENST00000628023 ADGRD2Q7Z7M1 963 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 BRSK2Q8IWQ3 736 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 C12orf56Q8IXR9 622 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 XXYLT1Q8NBI6 393 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 GPT2Q8TD30 523 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 C18orf25Q96B23 403 aaPredicted RBP19.62■□□□□ 0.73
CLN3-239ENST00000628023 UROC1Q96N76 676 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 KCTD10Q9H3F6 313 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 GOLGA2P5Q9HBQ8 144 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 TUBGCP4Q9UGJ1 667 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 UBQLN1Q9UMX0 589 aaKnown RBP19.62■□□□□ 0.73
CLN3-239ENST00000628023 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.62■□□□□ 0.73
CLN3-239ENST00000628023 TRIP11Q15643 1979 aa19.62■□□□□ 0.73
CLN3-239ENST00000628023 ZNF233A6NK53 670 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 NFICP08651 508 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 MCM4P33991 863 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 CA8P35219 290 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 PRCPP42785 496 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 NAB2Q15742 525 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 JADE1Q6IE81 842 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 CBWD2Q8IUF1 395 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 RDH13Q8NBN7 331 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 HASPINQ8TF76 798 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 BCL7CQ8WUZ0 217 aaPredicted RBP19.61■□□□□ 0.73
CLN3-239ENST00000628023 TSPAN18Q96SJ8 248 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 CDCA3Q99618 268 aaPredicted RBP19.61■□□□□ 0.73
CLN3-239ENST00000628023 TSG101Q99816 390 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 ASB7Q9H672 318 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 ENTPD7Q9NQZ7 604 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 MARCH5Q9NX47 278 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 KIAA1468Q9P260 1216 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 LZTS1Q9Y250 596 aa19.61■□□□□ 0.73
CLN3-239ENST00000628023 PODXLO00592 558 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 PSMA7O14818 248 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 TADA2AO75478 443 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 NR3C1P04150 777 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 SRGAP2BP0DMP2 458 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 PPP1R2P41236 205 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 CLCNKBP51801 687 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 SOX4Q06945 474 aaPredicted RBP19.6■□□□□ 0.73
CLN3-239ENST00000628023 BMS1Q14692 1282 aaKnown RBP19.6■□□□□ 0.73
CLN3-239ENST00000628023 SNRNP35Q16560 246 aaKnown RBP19.6■□□□□ 0.73
CLN3-239ENST00000628023 BEST2Q8NFU1 509 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 DDX27Q96GQ7 796 aaKnown RBP19.6■□□□□ 0.73
CLN3-239ENST00000628023 MSLNLQ96KJ4 702 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 TCF25Q9BQ70 676 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 PAAF1Q9BRP4 392 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 STK39Q9UEW8 545 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 DERAQ9Y315 318 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 C2CD2Q9Y426 696 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 PLXNA4Q9HCM2 1894 aa19.6■□□□□ 0.73
CLN3-239ENST00000628023 F8W810 466 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 B3GAT3O94766 335 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 KIF4AO95239 1232 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 ADRB2P07550 413 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 MORC3Q14149 939 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 SURF1Q15526 300 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 COBLL1Q53SF7 1204 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 PLPP4Q5VZY2 271 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 CEP135Q66GS9 1140 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 TMC7Q7Z402 723 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 DDX53Q86TM3 631 aaKnown RBP19.59■□□□□ 0.73
CLN3-239ENST00000628023 VPS52Q8N1B4 723 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 TRIML1Q8N9V2 468 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 SMRP1Q8NCR6 262 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 ADAM28Q9UKQ2 775 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 TRAF3IP3Q9Y228 551 aa19.59■□□□□ 0.73
CLN3-239ENST00000628023 PDCD11Q14690 1871 aaKnown RBP19.58■□□□□ 0.73
CLN3-239ENST00000628023 SF3B1O75533 1304 aaKnown RBP eCLIP19.58■□□□□ 0.733e-9■■■■■ 164.7
CLN3-239ENST00000628023 CYP3A5P20815 502 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 NR2F2P24468 414 aa19.58■□□□□ 0.72
CLN3-239ENST00000628023 RPL13P26373 211 aaKnown RBP19.58■□□□□ 0.72
CLN3-239ENST00000628023 RPL9P32969 192 aaKnown RBP19.58■□□□□ 0.72
CLN3-239ENST00000628023 TFAMQ00059 246 aaKnown RBP19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms