RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 NUP85Q9BW27 656 aa21.05■□□□□ 0.96
CHRNA4-209ENST00000627000 DOCK3Q8IZD9 2030 aa21.05■□□□□ 0.96
CHRNA4-209ENST00000627000 UNGP13051 313 aaPredicted RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 ITGA4P13612 1032 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 ACVR2BQ13705 512 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 ZNF564Q8TBZ8 553 aaPredicted RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 ALG3Q92685 438 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 CDT1Q9H211 546 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 GTF3C4Q9UKN8 822 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 H3BQF6 201 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 H3BRB1 525 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 RAD51CO43502 376 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 HEXIM1O94992 359 aaKnown RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 HOXC6P09630 235 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 OAS2P29728 719 aaKnown RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 MYL6P60660 151 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 GRM1Q13255 1194 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 ZNF211Q13398 564 aaPredicted RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 KCTD19Q17RG1 926 aaPredicted RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 DUSP28Q4G0W2 176 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 EFCAB13Q8IY85 973 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 AENQ8WTP8 325 aaKnown RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 CPA5Q8WXQ8 436 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 KRT35Q92764 455 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 TUT1Q9H6E5 874 aaKnown RBP21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 AKT3Q9Y243 479 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 ZSWIM8A7E2V4 1837 aa21.04■□□□□ 0.96
CHRNA4-209ENST00000627000 ESYT3A0FGR9 886 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 PPFIA4O75335 1185 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 MTA2O94776 668 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 COMTP21964 271 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 MARCKSL1P49006 195 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 TNNC1P63316 161 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 TFAMQ00059 246 aaKnown RBP21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 C2CD6Q53TS8 623 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 ZCCHC17Q9NP64 241 aaKnown RBP21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 CNOT8Q9UFF9 292 aaKnown RBP21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 GPR25O00155 361 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 ASS1P00966 412 aaKnown RBP21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 MMP3P08254 477 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 MAPK4P31152 587 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 GUCY2DQ02846 1103 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 AADACL2Q6P093 401 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 MTHFD1LQ6UB35 978 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 PHLDB2Q86SQ0 1253 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 TMEM130Q8N3G9 435 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 RBBP8NLQ8NC74 664 aaPredicted RBP21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 OR6J1Q8NGC5 347 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 RUBCNQ92622 972 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 CYFIP2Q96F07 1278 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 ABHD16BQ9H3Z7 469 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 TNFSF13BQ9Y275 285 aa21.03■□□□□ 0.96
CHRNA4-209ENST00000627000 KRIT1O00522 736 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 MAGEB2O15479 319 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 FGGP02679 453 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 TBXAS1P24557 533 aaPredicted RBP21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 PHKA2P46019 1235 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 AP3M2P53677 418 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 HUNKP57058 714 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 BPIFB4P59827 614 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 AMHR2Q16671 573 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 DUOXA2Q1HG44 320 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 PRAMEF19Q5SWL8 479 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 NAA35Q5VZE5 725 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 LLGL2Q6P1M3 1020 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 PASD1Q8IV76 773 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 NFKBIZQ9BYH8 718 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 DDX47Q9H0S4 455 aaKnown RBP21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 EPB41L5Q9HCM4 733 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 NR2E1Q9Y466 385 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 PCNTO95613 3336 aa21.02■□□□□ 0.96
CHRNA4-209ENST00000627000 POLR3GO15318 223 aaPredicted RBP21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 CXCL8P10145 99 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 GNA15P30679 374 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 TRADDQ15628 312 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 ZNF677Q86XU0 584 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 MCOLN2Q8IZK6 566 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 PPP1R13LQ8WUF5 828 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 CPB2Q96IY4 423 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 RNPC3Q96LT9 517 aaKnown RBP21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 IMPG2Q9BZV3 1241 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 NMRK2Q9NPI5 230 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 GDF3Q9NR23 364 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 PRMT7Q9NVM4 692 aaPredicted RBP21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 CNTN6Q9UQ52 1028 aa21.02■□□□□ 0.95
CHRNA4-209ENST00000627000 IGF2BP3O00425 579 aaKnown RBP eCLIP21.01■□□□□ 0.95
CHRNA4-209ENST00000627000 CYP1A1P04798 512 aaPredicted RBP21.01■□□□□ 0.95
CHRNA4-209ENST00000627000 CARSP49589 748 aaKnown RBP21.01■□□□□ 0.95
CHRNA4-209ENST00000627000 MARCH8Q5T0T0 291 aa21.01■□□□□ 0.95
CHRNA4-209ENST00000627000 UBR7Q8N806 425 aa21.01■□□□□ 0.95
CHRNA4-209ENST00000627000 CALR3Q96L12 384 aaKnown RBP21.01■□□□□ 0.95
CHRNA4-209ENST00000627000 CARD9Q9H257 536 aa21.01■□□□□ 0.95
CHRNA4-209ENST00000627000 SLC15A5A6NIM6 579 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 TMEM191BP0C7N4 346 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 PPFIA1Q13136 1202 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 SURF1Q15526 300 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 GRIK4Q16099 956 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 ILDR2Q71H61 639 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 UVRAGQ9P2Y5 699 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 HPCAL4Q9UM19 191 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms