RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TRPA1O75762 1119 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 ACADSBP45954 432 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 NFRKBQ6P4R8 1299 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 AGAP3Q96P47 875 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 MCEEQ96PE7 176 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 UNC45AQ9H3U1 944 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 FGFR1OP2Q9NVK5 253 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 WDR35Q9P2L0 1181 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 NAGPAQ9UK23 515 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 E2F6O75461 281 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 ARSEP51690 589 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 ZC2HC1CQ53FD0 456 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-219ENST00000620786 TBC1D1Q86TI0 1168 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-219ENST00000620786 SENP7Q9BQF6 1050 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 TRIM33Q9UPN9 1127 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 PNPLA6Q8IY17 1366 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 KCNA2P16389 499 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 TAF6P49848 677 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 ACTR2P61160 394 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 PDCD2Q16342 344 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-219ENST00000620786 CLMNQ96JQ2 1002 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 SLITRK1Q96PX8 696 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 PDAP1Q13442 181 aaKnown RBP11.99□□□□□ -0.49
CLIP1-219ENST00000620786 SYCP2LQ5T4T6 812 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 IZUMO3Q5VZ72 239 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 CCDC137Q6PK04 289 aaKnown RBP11.99□□□□□ -0.49
CLIP1-219ENST00000620786 FBXO16Q8IX29 292 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-219ENST00000620786 RCOR2Q8IZ40 523 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 ARHGAP18Q8N392 663 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 UBA3Q8TBC4 463 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 L3MBTL3Q96JM7 780 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-219ENST00000620786 MROH8Q9H579 483 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 CATSPERBQ9H7T0 1116 aa11.99□□□□□ -0.49
CLIP1-219ENST00000620786 GRAP2O75791 330 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 HIST1H2AGP0C0S8 130 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 DDX5P17844 614 aaKnown RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 HIST1H2ADP20671 130 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 NR1H3Q13133 447 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 NUGGCQ68CJ6 796 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 MMS22LQ6ZRQ5 1243 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 DHX40Q8IX18 779 aaKnown RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 PCSK9Q8NBP7 692 aaKnown RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 KLHL29Q96CT2 875 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 HIST1H2AHQ96KK5 128 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 HIST1H2AJQ99878 128 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 H2AFJQ9BTM1 129 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 PITPNM3Q9BZ71 974 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 SLC13A1Q9BZW2 595 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ABCB6Q9NP58 842 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 STARD7Q9NQZ5 370 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ATP8B1O43520 1251 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 TLR2O60603 784 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 VEGFAP15692 232 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 PNPLA4P41247 253 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 FMO5P49326 533 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 PCSK7Q16549 785 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 SYT2Q8N9I0 419 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 TRIM9Q9C026 710 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ANLNQ9NQW6 1124 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 CPSF2Q9P2I0 782 aaKnown RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 PPP2R3BQ9Y5P8 575 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 GRID2IPA4D2P6 1211 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ATP6V1E1P36543 226 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 BACE1P56817 501 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 TWF1Q12792 350 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ARMC6Q6NXE6 501 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 CXorf38Q8TB03 319 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 OSBPL9Q96SU4 736 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 C7orf25Q9BPX7 421 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 FAM96AQ9H5X1 160 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 TEKT2Q9UIF3 430 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 HLA-DRAP01903 254 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ETFBP38117 255 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 SESN2P58004 480 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-219ENST00000620786 WASHC5Q12768 1159 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ARID5BQ14865 1188 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 EMBQ6PCB8 327 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 SARM1Q6SZW1 724 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 ATP11CQ8NB49 1132 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 HPDLQ96IR7 371 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 CCSER1Q9C0I3 900 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 NEUROG2Q9H2A3 272 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 PXDNLA1KZ92 1463 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 TTC26A0AVF1 554 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 TEX33O43247 280 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 CHSY1Q86X52 802 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 DPP3Q9NY33 737 aa11.98□□□□□ -0.49
CLIP1-219ENST00000620786 AP3B1O00203 1094 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 HOXA2O43364 376 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 TYK2P29597 1187 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 CYP2C19P33261 490 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 MDM2Q00987 491 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-219ENST00000620786 RDM1Q8NG50 284 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 EML4Q9HC35 981 aaKnown RBP11.97□□□□□ -0.49
CLIP1-219ENST00000620786 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.97□□□□□ -0.49
CLIP1-219ENST00000620786 ANKEF1Q9NU02 776 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 MAD2L2Q9UI95 211 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 SLC30A1Q9Y6M5 507 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 H0Y626 953 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms