RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PDE11AQ9HCR9 933 aa17.94■□□□□ 0.46
CCDC28A-202ENST00000611852 STK39Q9UEW8 545 aa17.94■□□□□ 0.46
CCDC28A-202ENST00000611852 PCDHGC5Q9Y5F6 944 aa17.94■□□□□ 0.46
CCDC28A-202ENST00000611852 SOD2P04179 222 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 CD44P16070 742 aaKnown RBP17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 LRPAP1P30533 357 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 GUCY2FP51841 1108 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 PDE12Q6L8Q7 609 aaKnown RBP17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 TMC7Q7Z402 723 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 NT5DC4Q86YG4 428 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 BEST2Q8NFU1 509 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 MAFAQ8NHW3 353 aaPredicted RBP17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 NSUN3Q9H649 340 aaKnown RBP17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 NGRNQ9NPE2 291 aaKnown RBP17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 ENTPD7Q9NQZ7 604 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 MBD3O95983 291 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 CTSAP10619 480 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 NR2F2P24468 414 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 CYP24A1Q07973 514 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 STIM1Q13586 685 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 CCDC85BQ15834 202 aaPredicted RBP17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 EDRF1Q3B7T1 1238 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 PLPP4Q5VZY2 271 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 TAS1R1Q7RTX1 841 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 MFSD14AQ96MC6 490 aa17.93■□□□□ 0.46
CCDC28A-202ENST00000611852 EYSQ5T1H1 3165 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 PPP1R3GB7ZBB8 358 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 TULP1O00294 542 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 PPP1R2P41236 205 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 CASP4P49662 377 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 TFAMQ00059 246 aaKnown RBP17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 PSMD6Q15008 389 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 SURF1Q15526 300 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 TCEAL5Q5H9L2 206 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 DHTKD1Q96HY7 919 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 HERC2P3Q9BVR0 1158 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 CHST7Q9NS84 486 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 DPP3Q9NY33 737 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 IRAK3Q9Y616 596 aa17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 SF3B1O75533 1304 aaKnown RBP eCLIP17.92■□□□□ 0.46
CCDC28A-202ENST00000611852 HIDE1A8MVS5 230 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 PSMA7O14818 248 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 COL6A3P12111 3177 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 RPL13P26373 211 aaKnown RBP17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 PMS1P54277 932 aaKnown RBP17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 PTPRJQ12913 1337 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 ADAM9Q13443 819 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 SMC1AQ14683 1233 aaKnown RBP17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 ANKRD40Q6AI12 368 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 ADGRD2Q7Z7M1 963 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 MRPL43Q8N983 215 aaKnown RBP17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 AUTS2Q8WXX7 1259 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 PPM1EQ8WY54 764 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 FAM84AQ96KN4 292 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 B3GALT6Q96L58 329 aa17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 GZF1Q9H116 711 aaPredicted RBP17.91■□□□□ 0.46
CCDC28A-202ENST00000611852 REV3LO60673 3130 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 ANO9A1A5B4 782 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 TRIM49BA6NDI0 452 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 C2orf71A6NGG8 1288 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 PIRO00625 290 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 PPEF2O14830 753 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 AKAP3O75969 853 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 CXCL14O95715 111 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 CCNE1P24864 410 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 BRCC3P46736 316 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 LRRC63Q05C16 580 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 ELAVL2Q12926 359 aaKnown RBP17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 BMS1Q14692 1282 aaKnown RBP17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 PTPN14Q15678 1187 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 USP41Q3LFD5 358 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 C9orf57Q5W0N0 161 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 CEP135Q66GS9 1140 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 LMBRD2Q68DH5 695 aaPredicted RBP17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 WDR49Q8IV35 697 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 CACTINQ8WUQ7 758 aaKnown RBP17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 CCDC127Q96BQ5 260 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 TSG101Q99816 390 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 INTS13Q9NVM9 706 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 FRMD4BQ9Y2L6 1034 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 NUB1Q9Y5A7 615 aa17.9■□□□□ 0.46
CCDC28A-202ENST00000611852 I3L4J1 428 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 MAPK13O15264 365 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 TRAPPC3O43617 180 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 LILRB3O75022 631 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 URODP06132 367 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 DLATP10515 647 aaKnown RBP17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 GLUD2P49448 558 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 DSG1Q02413 1049 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 FAM171A1Q5VUB5 890 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 KIAA0319Q5VV43 1072 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 KLHL10Q6JEL2 608 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 C1orf127Q8N9H9 656 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 OR5B17Q8NGF7 314 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 PLEKHO2Q8TD55 490 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 PPP2R3CQ969Q6 453 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 EEF2KMTQ96G04 330 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 FNBP1Q96RU3 617 aa17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 POP1Q99575 1024 aaKnown RBP17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 MTMR12Q9C0I1 747 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms