RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 SNX27Q96L92 541 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 ZFP42Q96MM3 310 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 PLVAPQ9BX97 442 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 RNF39Q9H2S5 420 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 PCIF1Q9H4Z3 704 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 ASB7Q9H672 318 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 RNF19AQ9NV58 838 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 TBC1D13Q9NVG8 400 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 RBAKQ9NYW8 714 aaPredicted RBP10.91□□□□□ -0.66
UPF1-213ENST00000601981 KLK14Q9P0G3 267 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 CNTN3Q9P232 1028 aa10.91□□□□□ -0.66
UPF1-213ENST00000601981 CPSF3Q9UKF6 684 aaKnown RBP10.91□□□□□ -0.66
UPF1-213ENST00000601981 YBX2Q9Y2T7 364 aaKnown RBP10.91□□□□□ -0.66
UPF1-213ENST00000601981 LCHNA4D1U4 455 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 AKR1B15C9JRZ8 316 aaPredicted RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 TULP1O00294 542 aaPredicted RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 DLL1O00548 723 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 CLIC2O15247 247 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 SLC16A3O15427 465 aaKnown RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 TGFB1I1O43294 461 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 ZC3H11AO75152 810 aaKnown RBP eCLIP10.9□□□□□ -0.66
UPF1-213ENST00000601981 RB1P06400 928 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 MYOGP15173 224 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 NR2F2P24468 414 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 TNFSF9P41273 254 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 TUSC3Q13454 348 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 SNRNP35Q16560 246 aaKnown RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 PTPN21Q16825 1174 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 CCDC40Q4G0X9 1142 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 VWA3BQ502W6 1294 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 SEZ6Q53EL9 994 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 MIIPQ5JXC2 388 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 FKBP15Q5T1M5 1219 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 CREBRFQ8IUR6 639 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 CNGA4Q8IV77 575 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 BRSK2Q8IWQ3 736 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 TC2NQ8N9U0 490 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 TMEM174Q8WUU8 243 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 CLP1Q92989 425 aaKnown RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 KIF12Q96FN5 646 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 UROC1Q96N76 676 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 ZNF558Q96NG5 402 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 PANX2Q96RD6 677 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 ERGIC2Q96RQ1 377 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 TMEM175Q9BSA9 504 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 C11orf84Q9BUA3 381 aaPredicted RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 HAPLN2Q9GZV7 340 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 KCND1Q9NSA2 647 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 STK39Q9UEW8 545 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 DERAQ9Y315 318 aa10.9□□□□□ -0.66
UPF1-213ENST00000601981 R3HCC1Q9Y3T6 440 aaKnown RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 MRPL42Q9Y6G3 142 aaKnown RBP10.9□□□□□ -0.66
UPF1-213ENST00000601981 CUL9Q8IWT3 2517 aa10.9□□□□□ -0.67
UPF1-213ENST00000601981 UNC80Q8N2C7 3258 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 SMIM28A0A1B0GU29 152 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 TTC26A0AVF1 554 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 GOLGA8IPA6NC78 632 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 GOLGA8JA6NMD2 632 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 RBAK-RBAKDNI3L0D1 243 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 PES1O00541 588 aaKnown RBP10.89□□□□□ -0.67
UPF1-213ENST00000601981 FAM189A1O60320 539 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 MFAP3LO75121 409 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 GYPCP04921 128 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 ALDH2P05091 517 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 KCNE1P15382 129 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 BMPR1AP36894 532 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 ERVK-21P61565 698 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 TAP1Q03518 808 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 KRT17Q04695 432 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 ADAM9Q13443 819 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 BMS1Q14692 1282 aaKnown RBP10.89□□□□□ -0.67
UPF1-213ENST00000601981 TMEM132DQ14C87 1099 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 ENOX2Q16206 610 aaKnown RBP10.89□□□□□ -0.67
UPF1-213ENST00000601981 SLC10A6Q3KNW5 377 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 XKR4Q5GH76 650 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 FIGNQ5HY92 759 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 CEP135Q66GS9 1140 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 ALKAL1Q6UXT8 129 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 FRMD5Q7Z6J6 570 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 TRIM59Q8IWR1 403 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 TMEM192Q8IY95 271 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 COLGALT1Q8NBJ5 622 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 FBXO22Q8NEZ5 403 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 BEST2Q8NFU1 509 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 DDX27Q96GQ7 796 aaKnown RBP10.89□□□□□ -0.67
UPF1-213ENST00000601981 TMEM169Q96HH4 297 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 FNBP1Q96RU3 617 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 NUP58Q9BVL2 599 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 IKZF4Q9H2S9 585 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 NDST4Q9H3R1 872 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 ZNF576Q9H609 170 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 UBQLN1Q9UMX0 589 aaKnown RBP10.89□□□□□ -0.67
UPF1-213ENST00000601981 FAN1Q9Y2M0 1017 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 C2CD2Q9Y426 696 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 PLXNA4Q9HCM2 1894 aa10.89□□□□□ -0.67
UPF1-213ENST00000601981 LACTBL1A8MY62 500 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 C5orf67F2Z3F1 127 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 PTGESO14684 152 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 MAPK13O15264 365 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 ARHGAP6O43182 974 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms