RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 DDX23Q9BUQ8 820 aaKnown RBP10.5□□□□□ -0.73
VRK3-224ENST00000601849 TIPINQ9BVW5 301 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 OXCT2Q9BYC2 517 aaPredicted RBP10.5□□□□□ -0.73
VRK3-224ENST00000601849 GPR88Q9GZN0 384 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 BRD9Q9H8M2 597 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 LTB4R2Q9NPC1 389 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 KMT5AQ9NQR1 393 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 DDX19AQ9NUU7 478 aaKnown RBP10.5□□□□□ -0.73
VRK3-224ENST00000601849 HCFC1R1Q9NWW0 138 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 ZSCAN32Q9NX65 697 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 RAB23Q9ULC3 237 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 SPTBN4Q9H254 2564 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 ARHGEF37A1IGU5 675 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 PRR5-ARHGAP8B1AHC4 643 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 LAD1O00515 517 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 PODXLO00592 558 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 ADAM12O43184 909 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 TBC1D4O60343 1298 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 ABLIM3O94929 683 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 MCF2P10911 925 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 TKTP29401 623 aaKnown RBP10.49□□□□□ -0.73
VRK3-224ENST00000601849 OSTNP61366 133 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 ARHGAP8P85298 464 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 NT5DC1Q5TFE4 455 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 EEF1DP3Q658K8 133 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 C1orf228Q6PIY5 440 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 DTHD1Q6ZMT9 781 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 TPRG1Q6ZUI0 275 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 TCEAL8Q8IYN2 117 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 KCTD17Q8N5Z5 321 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 SNX29Q8TEQ0 813 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 ING5Q8WYH8 240 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 BSNDQ8WZ55 320 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 E2F7Q96AV8 911 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 RMDN1Q96DB5 314 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 ZSCAN31Q96LW9 406 aaPredicted RBP10.49□□□□□ -0.73
VRK3-224ENST00000601849 ACO2Q99798 780 aaKnown RBP10.49□□□□□ -0.73
VRK3-224ENST00000601849 IER2Q9BTL4 223 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 TRMT61BQ9BVS5 477 aaKnown RBP10.49□□□□□ -0.73
VRK3-224ENST00000601849 USP20Q9Y2K6 914 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 KIF3AQ9Y496 699 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 DCHS1Q96JQ0 3298 aa10.49□□□□□ -0.73
VRK3-224ENST00000601849 FAM186AA6NE01 2351 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 ZNF292O60281 2723 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 I3L4J1 428 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 XPOTO43592 962 aaKnown RBP10.48□□□□□ -0.73
VRK3-224ENST00000601849 LRRN2O75325 713 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 LARGE1O95461 756 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 GLULP15104 373 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 KCNE1P15382 129 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 CD72P21854 359 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 MCM4P33991 863 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 MATR3P43243 847 aaKnown RBP eCLIP10.48□□□□□ -0.73
VRK3-224ENST00000601849 BRCC3P46736 316 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 NPTX2P47972 431 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 ROR1Q01973 937 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 PLD1Q13393 1074 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 CTXN3Q4LDR2 81 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 ZNF280DQ6N043 979 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 MPZL3Q6UWV2 235 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 ALKAL1Q6UXT8 129 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 YAF2Q8IY57 180 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 FBXO18Q8NFZ0 1043 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 CLDN23Q96B33 292 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 KIFC3Q9BVG8 833 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 GOLGA2P5Q9HBQ8 144 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 GMEB2Q9UKD1 530 aa10.48□□□□□ -0.73
VRK3-224ENST00000601849 WDR27A2RRH5 827 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 H0YCG3 227 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 WNT7AO00755 349 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 ZNF263O14978 683 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 CLDN3O15551 220 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 TOM1L1O75674 476 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 CPB1P15086 417 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 PSMC3P17980 439 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 LMNB2Q03252 620 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 PTGDRQ13258 359 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 KYAT1Q16773 422 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 XKR4Q5GH76 650 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 TANGO2Q6ICL3 276 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 USP37Q86T82 979 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 CCDC83Q8IWF9 413 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 MAML2Q8IZL2 1156 aaPredicted RBP10.47□□□□□ -0.73
VRK3-224ENST00000601849 DCLK2Q8N568 766 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 SUMF1Q8NBK3 374 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 CSGALNACT1Q8TDX6 532 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 DEPDC1BQ8WUY9 529 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 FAM3CQ92520 227 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 SMARCD2Q92925 531 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 MSANTD3Q96H12 275 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 CDK5RAP3Q96JB5 506 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 CDT1Q9H211 546 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 CXCL16Q9H2A7 254 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 SLITRK6Q9H5Y7 841 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 PLEKHA5Q9HAU0 1116 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 POLD4Q9HCU8 107 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 TRPV5Q9NQA5 729 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 ASAH2Q9NR71 780 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 HEBP1Q9NRV9 189 aa10.47□□□□□ -0.73
VRK3-224ENST00000601849 AFF4Q9UHB7 1163 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms