RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 HTR4Q13639 388 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 UVSSAQ2YD98 709 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 FOXD4L6Q3SYB3 417 aaPredicted RBP20.47■□□□□ 0.87
PNKP-213ENST00000599543 TMEM119Q4V9L6 283 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 CD300LGQ6UXG3 332 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 FOXD4L3Q6VB84 417 aaPredicted RBP20.47■□□□□ 0.87
PNKP-213ENST00000599543 BRAPQ7Z569 592 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 AK8Q96MA6 479 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 RTP3Q9BQQ7 232 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 LARSQ9P2J5 1176 aaKnown RBP20.47■□□□□ 0.87
PNKP-213ENST00000599543 CDH7Q9ULB5 785 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 NUB1Q9Y5A7 615 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 NUMBLQ9Y6R0 609 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 NOTCH4Q99466 2003 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 H0YCG3 227 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 POU2F2P09086 479 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 MAPTP10636 758 aaKnown RBP20.46■□□□□ 0.87
PNKP-213ENST00000599543 MATR3P43243 847 aaKnown RBP eCLIP20.46■□□□□ 0.87
PNKP-213ENST00000599543 CACNB1Q02641 598 aaPredicted RBP20.46■□□□□ 0.87
PNKP-213ENST00000599543 CEBPZQ03701 1054 aaKnown RBP20.46■□□□□ 0.87
PNKP-213ENST00000599543 RSPO2Q6UXX9 243 aaPredicted RBP20.46■□□□□ 0.87
PNKP-213ENST00000599543 ZPBP2Q6X784 338 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 RTL10Q7L3V2 364 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 BICD1Q96G01 975 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 CALML4Q96GE6 196 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 ZBTB45Q96K62 511 aaPredicted RBP20.46■□□□□ 0.87
PNKP-213ENST00000599543 CA14Q9ULX7 337 aa20.46■□□□□ 0.87
PNKP-213ENST00000599543 RIF1Q5UIP0 2472 aaKnown RBP20.45■□□□□ 0.86
PNKP-213ENST00000599543 CLDN3O15551 220 aa20.45■□□□□ 0.86
PNKP-213ENST00000599543 SLC26A4O43511 780 aa20.45■□□□□ 0.86
PNKP-213ENST00000599543 GFRA3O60609 400 aa20.45■□□□□ 0.86
PNKP-213ENST00000599543 RPL9P32969 192 aaKnown RBP20.45■□□□□ 0.86
PNKP-213ENST00000599543 VARS2Q5ST30 1063 aaKnown RBP20.45■□□□□ 0.86
PNKP-213ENST00000599543 ST13P5Q8NFI4 369 aaPredicted RBP20.45■□□□□ 0.86
PNKP-213ENST00000599543 GPR152Q8TDT2 470 aa20.45■□□□□ 0.86
PNKP-213ENST00000599543 FGF13Q92913 245 aa20.45■□□□□ 0.86
PNKP-213ENST00000599543 C18orf25Q96B23 403 aaPredicted RBP20.45■□□□□ 0.86
PNKP-213ENST00000599543 CLIC4Q9Y696 253 aa20.45■□□□□ 0.86
PNKP-213ENST00000599543 NPHP3-ACAD11A0A0J9YXS1 232 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 KRBA1A5PL33 1030 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 SYN3O14994 580 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 PI15O43692 258 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 BMP15O95972 392 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 UBA7P41226 1012 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 ROR1Q01973 937 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 PABPC1LQ4VXU2 614 aaKnown RBP20.44■□□□□ 0.86
PNKP-213ENST00000599543 SEZ6Q53EL9 994 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 SLC8B1Q6J4K2 584 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 MTSS1LQ765P7 747 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 CCDC105Q8IYK2 499 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 RASSF8Q8NHQ8 419 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 HCFC1R1Q9NWW0 138 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 ODF2LQ9ULJ1 636 aa20.44■□□□□ 0.86
PNKP-213ENST00000599543 H7C4K7 107 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 MEFVO15553 781 aaPredicted RBP20.43■□□□□ 0.86
PNKP-213ENST00000599543 ELF1P32519 619 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 MCM4P33991 863 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 NCKAP1LP55160 1127 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 MCL1Q07820 350 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 BECN1Q14457 450 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 SF3A1Q15459 793 aaKnown RBP20.43■□□□□ 0.86
PNKP-213ENST00000599543 SLC10A6Q3KNW5 377 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 ARSHQ5FYA8 562 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 PARM1Q6UWI2 310 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 GPBP1Q86WP2 473 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 ZNF461Q8TAF7 563 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 ITFG1Q8TB96 612 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 FGF14Q92915 247 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 REEP2Q9BRK0 252 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 TBC1D17Q9HA65 648 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 ARHGEF3Q9NR81 526 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 SLC2A4RGQ9NR83 387 aa20.43■□□□□ 0.86
PNKP-213ENST00000599543 PTPRZ1P23471 2315 aaPredicted RBP20.43■□□□□ 0.86
PNKP-213ENST00000599543 FAM186AA6NE01 2351 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 PRRG1O14668 218 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 HNRNPDLO14979 420 aaKnown RBP20.42■□□□□ 0.86
PNKP-213ENST00000599543 LRG1P02750 347 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 CXCL8P10145 99 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 ARPP19P56211 112 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 DHX8Q14562 1220 aaKnown RBP20.42■□□□□ 0.86
PNKP-213ENST00000599543 HAUS6Q7Z4H7 955 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 DTWD2Q8NBA8 298 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 DNMT3BQ9UBC3 853 aaKnown RBP20.42■□□□□ 0.86
PNKP-213ENST00000599543 KCNH3Q9ULD8 1083 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 MIA3Q5JRA6 1907 aa20.42■□□□□ 0.86
PNKP-213ENST00000599543 WDR27A2RRH5 827 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 PROB1E7EW31 1015 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 K7ENM7 598 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 FAM13AO94988 1023 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 KRT18P05783 430 aaKnown RBP20.41■□□□□ 0.86
PNKP-213ENST00000599543 CLTAP09496 248 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 ZSCAN22P10073 491 aaPredicted RBP20.41■□□□□ 0.86
PNKP-213ENST00000599543 SCP2P22307 547 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 LONP1P36776 959 aaKnown RBP20.41■□□□□ 0.86
PNKP-213ENST00000599543 NBL1P41271 181 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 LIG4P49917 911 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 GRIN1Q05586 938 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 PPP2R3AQ06190 1150 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 CTXN3Q4LDR2 81 aa20.41■□□□□ 0.86
PNKP-213ENST00000599543 MYCT1Q8N699 235 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms