RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 LIG4P49917 911 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 ARPP19P56211 112 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 NTHL1P78549 312 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 ROR1Q01973 937 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 MCL1Q07820 350 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 HTR4Q13639 388 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 DHX8Q14562 1220 aaKnown RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 PABPC1LQ4VXU2 614 aaKnown RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 VARS2Q5ST30 1063 aaKnown RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 CD300LGQ6UXG3 332 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 GPBP1Q86WP2 473 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 GPR152Q8TDT2 470 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 FGF13Q92913 245 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 C18orf25Q96B23 403 aaPredicted RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 ZBTB45Q96K62 511 aaPredicted RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 VWA8A3KMH1 1905 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 VPS37CA5D8V6 355 aaPredicted RBP10.69□□□□□ -0.7
VRK3-216ENST00000599342 HNRNPDLO14979 420 aaKnown RBP10.69□□□□□ -0.7
VRK3-216ENST00000599342 TBCAO75347 108 aaKnown RBP10.69□□□□□ -0.7
VRK3-216ENST00000599342 CLTAP09496 248 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 CXCL8P10145 99 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 SCP2P22307 547 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 LONP1P36776 959 aaKnown RBP10.69□□□□□ -0.7
VRK3-216ENST00000599342 NCKAP1LP55160 1127 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 PPP2R3AQ06190 1150 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 KYAT1Q16773 422 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 SLC10A6Q3KNW5 377 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 SEZ6Q53EL9 994 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 SLC8B1Q6J4K2 584 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 ZNF280DQ6N043 979 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 RSPO2Q6UXX9 243 aaPredicted RBP10.69□□□□□ -0.7
VRK3-216ENST00000599342 HAUS6Q7Z4H7 955 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 CCDC105Q8IYK2 499 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 MYCT1Q8N699 235 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 APPL2Q8NEU8 664 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 ZNF461Q8TAF7 563 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 REEP2Q9BRK0 252 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 ZHX3Q9H4I2 956 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 TBC1D17Q9HA65 648 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 PLEKHA5Q9HAU0 1116 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 PARVGQ9HBI0 331 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 ARHGEF3Q9NR81 526 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 SLC2A4RGQ9NR83 387 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 HCFC1R1Q9NWW0 138 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 KCNH3Q9ULD8 1083 aa10.69□□□□□ -0.7
VRK3-216ENST00000599342 MRPS23Q9Y3D9 190 aaKnown RBP10.69□□□□□ -0.7
VRK3-216ENST00000599342 WDR27A2RRH5 827 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 KRBA1A5PL33 1030 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 XPOTO43592 962 aaKnown RBP10.68□□□□□ -0.7
VRK3-216ENST00000599342 PI15O43692 258 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 TRAK2O60296 914 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 RHOP08100 348 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 PLCG1P19174 1290 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 PDCP20941 246 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 MARCKSP29966 332 aaPredicted RBP10.68□□□□□ -0.7
VRK3-216ENST00000599342 ABCD1P33897 745 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 SF3A1Q15459 793 aaKnown RBP10.68□□□□□ -0.7
VRK3-216ENST00000599342 CTXN3Q4LDR2 81 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 ARSHQ5FYA8 562 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 PARM1Q6UWI2 310 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 ELMOD1Q8N336 334 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 DTWD2Q8NBA8 298 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 ST13P5Q8NFI4 369 aaPredicted RBP10.68□□□□□ -0.7
VRK3-216ENST00000599342 ITFG1Q8TB96 612 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 RAD54LQ92698 747 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 FGF14Q92915 247 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 KIF12Q96FN5 646 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 SHDQ96IW2 340 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 SUSD3Q96L08 255 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 CYP4F11Q9HBI6 524 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 DNMT3BQ9UBC3 853 aaKnown RBP10.68□□□□□ -0.7
VRK3-216ENST00000599342 TUBGCP4Q9UGJ1 667 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 TBX20Q9UMR3 447 aa10.68□□□□□ -0.7
VRK3-216ENST00000599342 UBQLN1Q9UMX0 589 aaKnown RBP10.68□□□□□ -0.7
VRK3-216ENST00000599342 ZDBF2Q9HCK1 2354 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 ARHGEF37A1IGU5 675 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 MEFVO15553 781 aaPredicted RBP10.67□□□□□ -0.7
VRK3-216ENST00000599342 ABLIM3O94929 683 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 CPB1P15086 417 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 ATF2P15336 505 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 PTPN2P17706 415 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 NBL1P41271 181 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 YWHAHQ04917 246 aaPredicted RBP10.67□□□□□ -0.7
VRK3-216ENST00000599342 SPAG1Q07617 926 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 MCM6Q14566 821 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 KARSQ15046 597 aaKnown RBP10.67□□□□□ -0.7
VRK3-216ENST00000599342 ANGPT1Q15389 498 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 TPGS2Q68CL5 300 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 PHLDB3Q6NSJ2 640 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 NPAS3Q8IXF0 933 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 KRI1Q8N9T8 703 aaKnown RBP10.67□□□□□ -0.7
VRK3-216ENST00000599342 ING5Q8WYH8 240 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 LARP4BQ92615 738 aaKnown RBP10.67□□□□□ -0.7
VRK3-216ENST00000599342 DDX12PQ92771 950 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 KCNN1Q92952 543 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 KXD1Q9BQD3 176 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 RPF1Q9H9Y2 349 aaKnown RBP10.67□□□□□ -0.7
VRK3-216ENST00000599342 FBXL5Q9UKA1 691 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 PCDHB8Q9UN66 801 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms