RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GBP4Q96PP9 640 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 POP1Q99575 1024 aaKnown RBP15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 HERC2P3Q9BVR0 1158 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 NGRNQ9NPE2 291 aaKnown RBP15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 ENTPD7Q9NQZ7 604 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 SLC38A7Q9NVC3 462 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 UBQLN1Q9UMX0 589 aaKnown RBP15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 TRAF3IP3Q9Y228 551 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 EYSQ5T1H1 3165 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 MYO9BQ13459 2157 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 REV3LO60673 3130 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 ZNF233A6NK53 670 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 PPP1R3GB7ZBB8 358 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 TULP1O00294 542 aaPredicted RBP15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 C2CD2LO14523 706 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 SPTLC1O15269 473 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 CYP3A5P20815 502 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 RPL9P32969 192 aaKnown RBP15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 LTBRP36941 435 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 DLX2Q07687 328 aaPredicted RBP15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 TMEM132DQ14C87 1099 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 CTC1Q2NKJ3 1217 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 COBLL1Q53SF7 1204 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 RTP2Q5QGT7 225 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 SLC9A9Q8IVB4 645 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 ADSSL1Q8N142 457 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 OR5B17Q8NGF7 314 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 TMEM174Q8WUU8 243 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 ZNF516Q92618 1163 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 DDX27Q96GQ7 796 aaKnown RBP15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 MFSD14AQ96MC6 490 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 UROC1Q96N76 676 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 CLSTN2Q9H4D0 955 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 RMND1Q9NWS8 449 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 KIAA1468Q9P260 1216 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 CGNQ9P2M7 1197 aaKnown RBP15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 DERAQ9Y315 318 aa15.41■□□□□ 0.06
SHKBP1-217ENST00000598558 COL6A3P12111 3177 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 ANO9A1A5B4 782 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 CARNS1A5YM72 827 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 PIRO00625 290 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 KIAA0391O15091 583 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 CLASP2O75122 1294 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 IL18RAPO95256 599 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 GLP2RO95838 553 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 NR3C1P04150 777 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 CNPP09543 421 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 DSG1Q02413 1049 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 CYP24A1Q07973 514 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 ADAM15Q13444 863 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 KCNC3Q14003 757 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 SMC1AQ14683 1233 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 SNRNP35Q16560 246 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 DUSP6Q16828 381 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 FAM171A1Q5VUB5 890 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 C9orf57Q5W0N0 161 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 CENPPQ6IPU0 288 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 PDE12Q6L8Q7 609 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 PRSS55Q6UWB4 352 aaPredicted RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 C1orf127Q8N9H9 656 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 EEF2KMTQ96G04 330 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 BORCS6Q96GS4 357 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 KLHL5Q96PQ7 755 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 TLE6Q9H808 572 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 DPP3Q9NY33 737 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 HOOK1Q9UJC3 728 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 C2CD2Q9Y426 696 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 IRAK3Q9Y616 596 aa15.4■□□□□ 0.06
SHKBP1-217ENST00000598558 MYO7AQ13402 2215 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 ADAM12O43184 909 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 EXOC3O60645 756 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 RPL17P18621 184 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 FGFR3P22607 806 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 TKTP29401 623 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 TFAMQ00059 246 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 TFF2Q03403 129 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 PSMD6Q15008 389 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 SKIV2LQ15477 1246 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 C1orf220Q5T0J3 134 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 ANKRD40Q6AI12 368 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 RSPO2Q6UXX9 243 aaPredicted RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 BEST2Q8NFU1 509 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 LNX1Q8TBB1 728 aaPredicted RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 FEZF2Q8TBJ5 459 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 RIN2Q8WYP3 895 aaPredicted RBP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 TSPAN18Q96SJ8 248 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 RXFP1Q9HBX9 757 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 KIAA1586Q9HCI6 787 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 SIX4Q9UIU6 781 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 SF3B1O75533 1304 aaKnown RBP eCLIP15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 ATG2AQ2TAZ0 1938 aa15.39■□□□□ 0.05
SHKBP1-217ENST00000598558 TRIM49BA6NDI0 452 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 CALUO43852 315 aaPredicted RBP15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 AKAP3O75969 853 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 CA8P35219 290 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 GLUD2P49448 558 aa15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 AARSP49588 968 aaKnown RBP eCLIP15.38■□□□□ 0.05
SHKBP1-217ENST00000598558 DLG4P78352 724 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms