RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 CEP120Q8N960 986 aa18.3■□□□□ 0.52
SHKBP1-216ENST00000598201 OR6J1Q8NGC5 347 aa18.3■□□□□ 0.52
SHKBP1-216ENST00000598201 FAM212AQ96EL1 285 aa18.3■□□□□ 0.52
SHKBP1-216ENST00000598201 ABCB6Q9NP58 842 aa18.3■□□□□ 0.52
SHKBP1-216ENST00000598201 NUB1Q9Y5A7 615 aa18.3■□□□□ 0.52
SHKBP1-216ENST00000598201 A0A087WZ62 844 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 ZMYND10O75800 440 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 CST3P01034 146 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 VTNP04004 478 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 HOXD8P13378 290 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 CYP2B6P20813 491 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 RGS2P41220 211 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 OSTNP61366 133 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 MRPS25P82663 173 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 NCOA4Q13772 614 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 ZNF568Q3ZCX4 644 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 BEND6Q5SZJ8 279 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 WDR49Q8IV35 697 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 HNRNPLLQ8WVV9 542 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 TAF4BQ92750 862 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 FDXACB1Q9BRP7 624 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 NFKBIZQ9BYH8 718 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 MTMR12Q9C0I1 747 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 SLC5A4Q9NY91 659 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 OGFRQ9NZT2 677 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 FLRT1Q9NZU1 646 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 RNF14Q9UBS8 474 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 MAGEB2O15479 319 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 ATMINO43313 823 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 PHACTR2O75167 634 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 CBX1P83916 185 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 CUL2Q13617 745 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 MARCH8Q5T0T0 291 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 IQSEC1Q6DN90 963 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 MTHFD1LQ6UB35 978 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 SYCE1Q8N0S2 351 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 HDAC7Q8WUI4 952 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 FAM81BQ96LP2 452 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 LRRC1Q9BTT6 524 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 AKT3Q9Y243 479 aa18.29■□□□□ 0.52
SHKBP1-216ENST00000598201 TARSL2A2RTX5 802 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 CLTAP09496 248 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 HOXC6P09630 235 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 NOP14P78316 857 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 GPC5P78333 572 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 AMHR2Q16671 573 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 TMEM192Q8IY95 271 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 HES6Q96HZ4 224 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 HINFPQ9BQA5 517 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 FUT8Q9BYC5 575 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 CDT1Q9H211 546 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 COL1A2P08123 1366 aa18.28■□□□□ 0.52
SHKBP1-216ENST00000598201 PHKA2P46019 1235 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 PRMT2P55345 433 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 TNFAIP2Q03169 654 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 PPFIA1Q13136 1202 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 TMEM132AQ24JP5 1023 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 RHOT2Q8IXI1 618 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 CTTNBP2NLQ9P2B4 639 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 TNFSF13BQ9Y275 285 aa18.27■□□□□ 0.52
SHKBP1-216ENST00000598201 CES2O00748 559 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 HADHBP55084 474 aaKnown RBP18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 POU5F1BQ06416 359 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 TCEAL1Q15170 157 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 GRIK4Q16099 956 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 DGKDQ16760 1214 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 EFCAB13Q8IY85 973 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 LENG1Q96BZ8 264 aaPredicted RBP18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 APBA2Q99767 749 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 PRMT7Q9NVM4 692 aaPredicted RBP18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 AMFRQ9UKV5 643 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 ZNF236Q9UL36 1845 aa18.27■□□□□ 0.51
SHKBP1-216ENST00000598201 TUBBP07437 444 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 AP3M2P53677 418 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 MYL6P60660 151 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 IRX5P78411 483 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 CLEC16AQ2KHT3 1053 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 IFNLR1Q8IU57 520 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 MSL3Q8N5Y2 521 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 RAET1EQ8TD07 263 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 PPP1R13LQ8WUF5 828 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 PBKQ96KB5 322 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 PRDM10Q9NQV6 1147 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 DMGDHQ9UI17 866 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 PCDHB2Q9Y5E7 798 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 MEFVO15553 781 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 DYNC1LI2O43237 492 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 CEP104O60308 925 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 ERLIN1O75477 346 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 ASS1P00966 412 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 SLC7A5Q01650 507 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 IRF5Q13568 498 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 CCL14Q16627 93 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 FAM187BQ17R55 369 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 ACAD10Q6JQN1 1059 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 USP38Q8NB14 1042 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 CPB2Q96IY4 423 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 L1RE1Q9UN81 338 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 PCDHB4Q9Y5E5 795 aa18.26■□□□□ 0.51
SHKBP1-216ENST00000598201 DDX3YO15523 660 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms