RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PCDHGA2Q9Y5H1 932 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 STK24Q9Y6E0 443 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 PHLPP2Q6ZVD8 1323 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 GPR179Q6PRD1 2367 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 SYN3O14994 580 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 TBC1D4O60343 1298 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 LRG1P02750 347 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ATF2P15336 505 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 CCT6AP40227 531 aaKnown RBP13.72□□□□□ -0.21
TRIM28-212ENST00000597995 BRCC3P46736 316 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ROR1Q01973 937 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 PDIA5Q14554 519 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 IL17AQ16552 155 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 DCLK2Q8N568 766 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 GPR161Q8N6U8 529 aaKnown RBP13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ZBTB44Q8NCP5 570 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ATRIPQ8WXE1 791 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ING5Q8WYH8 240 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 NELL1Q92832 810 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ELSPBP1Q96BH3 223 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 MCRS1Q96EZ8 462 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ACO2Q99798 780 aaKnown RBP13.72□□□□□ -0.21
TRIM28-212ENST00000597995 TMEM134Q9H6X4 195 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 GOLGA2P5Q9HBQ8 144 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 PTPRHQ9HD43 1115 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 ZSCAN32Q9NX65 697 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 CEP250Q9BV73 2442 aa13.72□□□□□ -0.21
TRIM28-212ENST00000597995 H7C4K7 107 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 I3L4J1 428 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 PRRG1O14668 218 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 ZNF197O14709 1029 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 KCNE1P15382 129 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 CD72P21854 359 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 TARSP26639 723 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 GJB2P29033 226 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 RPL9P32969 192 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 CSTF1Q05048 431 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 SOX4Q06945 474 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 PTGDRQ13258 359 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 GNL2Q13823 731 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 MRPL58Q14197 206 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 SLC5A9Q2M3M2 681 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 PRSS36Q5K4E3 855 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 VARS2Q5ST30 1063 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 TPGS2Q68CL5 300 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 TANGO2Q6ICL3 276 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 ZNF852Q6ZMS4 543 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 TPRG1Q6ZUI0 275 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 TCEAL8Q8IYN2 117 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 DNASE1L2Q92874 299 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 MRPL4Q9BYD3 311 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 FAM126AQ9BYI3 521 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 PLA2G2FQ9BZM2 168 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 CDT1Q9H211 546 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 UPF2Q9HAU5 1272 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 POLD4Q9HCU8 107 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 LRWD1Q9UFC0 647 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 MAFFQ9ULX9 164 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 KIAA1024Q9UPX6 916 aa13.71□□□□□ -0.21
TRIM28-212ENST00000597995 RBM19Q9Y4C8 960 aaKnown RBP13.71□□□□□ -0.21
TRIM28-212ENST00000597995 PATJQ8NI35 1801 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 MED19A0JLT2 244 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-212ENST00000597995 WDR27A2RRH5 827 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 CCDC169A6NNP5 214 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 PODXLO00592 558 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 LILRB5O75023 590 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 MCF2P10911 925 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 CEBPBP17676 345 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 NPTX2P47972 431 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 PEX3P56589 373 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 ADCY1Q08828 1119 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 FZD5Q13467 585 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 ZNF568Q3ZCX4 644 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 POTEHQ6S545 545 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 MAMSTRQ6ZN01 415 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 CEP120Q8N960 986 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 IGSF22Q8N9C0 903 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 SECISBP2LQ93073 1101 aaKnown RBP13.7□□□□□ -0.22
TRIM28-212ENST00000597995 ZMAT2Q96NC0 199 aaKnown RBP13.7□□□□□ -0.22
TRIM28-212ENST00000597995 ACAP3Q96P50 834 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 RAB34Q9BZG1 259 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 C17orf75Q9HAS0 396 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 ZFP14Q9HCL3 533 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 TRPV5Q9NQA5 729 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.7□□□□□ -0.22
TRIM28-212ENST00000597995 DDX19AQ9NUU7 478 aaKnown RBP13.7□□□□□ -0.22
TRIM28-212ENST00000597995 ARHGAP28Q9P2N2 729 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 NCDNQ9UBB6 729 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 NOL7Q9UMY1 257 aaKnown RBP13.7□□□□□ -0.22
TRIM28-212ENST00000597995 F5P12259 2224 aa13.7□□□□□ -0.22
TRIM28-212ENST00000597995 SHISA7A6NL88 538 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 MAN2B1O00754 1011 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 SDHBP21912 280 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 PROZP22891 400 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 FCARP24071 287 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 DMP1Q13316 513 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-212ENST00000597995 DAW1Q8N136 415 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 SUSD3Q96L08 255 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 DRC1Q96MC2 740 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 CORO1BQ9BR76 489 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms