RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 NFIL3Q16649 462 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 FAM26DQ5JW98 314 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 KIAA0319Q5VV43 1072 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 DTWD2Q8NBA8 298 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 ANKRD20A12PQ8NF67 263 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 POMGNT1Q8WZA1 660 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 CEP63Q96MT8 703 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 DUSP9Q99956 384 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 ADPGKQ9BRR6 497 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 TCHPQ9BT92 498 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 MFSD1Q9H3U5 465 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 THAP9Q9H5L6 903 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 CDHR5Q9HBB8 845 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 R4GN57 208 aa13.12□□□□□ -0.31
SHKBP1-213ENST00000597325 PLXNA4Q9HCM2 1894 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 KIAA0391O15091 583 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 CLIC2O15247 247 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 B4GALT5O43286 388 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 TSPAN1O60635 241 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 RPS6KA5O75582 802 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 CHRNA1P02708 482 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 GHRP10912 638 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 EPB41P11171 864 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 GARTP22102 1010 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 FGFR4P22455 802 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 AXLP30530 894 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 PAK2Q13177 524 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 ADAM9Q13443 819 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 GSE1Q14687 1217 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 NOLC1Q14978 699 aaKnown RBP eCLIP13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 ZNF568Q3ZCX4 644 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 CCDC40Q4G0X9 1142 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 NOTUMQ6P988 496 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 MPZL3Q6UWV2 235 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 TMEM184AQ6ZMB5 413 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 TSHZ1Q6ZSZ6 1077 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 C12orf56Q8IXR9 622 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 POF1BQ8WVV4 589 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 TMEM40Q8WWA1 233 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 APBB2Q92870 758 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 ACO2Q99798 780 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 SRRTQ9BXP5 876 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 IKZF4Q9H2S9 585 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 PIN4Q9Y237 131 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 FRMD4BQ9Y2L6 1034 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 SQORQ9Y6N5 450 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 TTC3P53804 2025 aa13.11□□□□□ -0.31
SHKBP1-213ENST00000597325 C2CD4DB7Z1M9 353 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 TISP43B9A030 160 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 ANKRD63C9JTQ0 380 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 PER2O15055 1255 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 GPR182O15218 404 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 SLC16A3O15427 465 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 CLDN3O15551 220 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 EXOC3O60645 756 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 GNA14O95837 355 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 TPM2P07951 284 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 HARSP12081 509 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 CDK11BP21127 795 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 SPAG1Q07617 926 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 BTG3Q14201 252 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 MYBPC2Q14324 1141 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 NCAPHQ15003 741 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 FBXO47Q5MNV8 452 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 CEP135Q66GS9 1140 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 SLC39A4Q6P5W5 647 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 SYCE2Q6PIF2 218 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 LRRC55Q6ZSA7 311 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 FAM228AQ86W67 206 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 CREBRFQ8IUR6 639 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 SLC9A9Q8IVB4 645 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 KLHL23Q8NBE8 558 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 XXYLT1Q8NBI6 393 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 CCDC51Q96ER9 411 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 CPB2Q96IY4 423 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 MED15Q96RN5 788 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 HINFPQ9BQA5 517 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 CBWD1Q9BRT8 395 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 MSTO1Q9BUK6 570 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 PCIF1Q9H4Z3 704 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 TLE6Q9H808 572 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 AGPAT5Q9NUQ2 364 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 FANCLQ9NW38 375 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 HSPBP1Q9NZL4 362 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 TNFSF13BQ9Y275 285 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 USP20Q9Y2K6 914 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 NOC2LQ9Y3T9 749 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 NR2E1Q9Y466 385 aa13.1□□□□□ -0.31
SHKBP1-213ENST00000597325 LDHAP00338 332 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 EDN1P05305 212 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 ARF4P18085 180 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 PSMC2P35998 433 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 NFX1Q12986 1120 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 LPIN1Q14693 890 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 AMHR2Q16671 573 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 DUSP6Q16828 381 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 DCAF4L1Q3SXM0 396 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 HSP90AA4PQ58FG1 418 aa13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 ZC3H3Q8IXZ2 948 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-213ENST00000597325 GPD1LQ8N335 351 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms