RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 NLRC4Q9NPP4 1024 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.8■□□□□ 0.124e-6■■■■■ 48.8
VRK3-212ENST00000596814 UBQLN1Q9UMX0 589 aaKnown RBP15.8■□□□□ 0.12
VRK3-212ENST00000596814 DAAM1Q9Y4D1 1078 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 FHOD1Q9Y613 1164 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 SMIM28A0A1B0GU29 152 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 RNF225M0QZC1 329 aaPredicted RBP15.8■□□□□ 0.12
VRK3-212ENST00000596814 XPOTO43592 962 aaKnown RBP15.8■□□□□ 0.12
VRK3-212ENST00000596814 CLSTN1O94985 981 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 ITGB3P05106 788 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 KRT9P35527 623 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 ZBED6P86452 979 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 LRMPQ12912 555 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 TCTN1Q2MV58 587 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 WDR44Q5JSH3 913 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 ZNF598Q86UK7 904 aaKnown RBP15.8■□□□□ 0.12
VRK3-212ENST00000596814 ZFP42Q96MM3 310 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 GAD1Q99259 594 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 PI4K2AQ9BTU6 479 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 DPP3Q9NY33 737 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 ITGA11Q9UKX5 1188 aa15.8■□□□□ 0.12
VRK3-212ENST00000596814 TDRD15B5MCY1 1934 aaKnown RBP15.79■□□□□ 0.12
VRK3-212ENST00000596814 PTGESO14684 152 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 EOMESO95936 686 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 KRT19P08727 400 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 ITGB8P26012 769 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 GUCY2FP51841 1108 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 FAM189BP81408 668 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 ZBTB6Q15916 424 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 IQCEQ6IPM2 695 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 MFSD5Q6N075 450 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 PHLDB3Q6NSJ2 640 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 CNKSR3Q6P9H4 555 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 GJB7Q6PEY0 223 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 ARHGEF19Q8IW93 802 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 BAP1Q92560 729 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 TRIM44Q96DX7 344 aaPredicted RBP15.79■□□□□ 0.12
VRK3-212ENST00000596814 ABHD10Q9NUJ1 306 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 RNF19AQ9NV58 838 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 TUBGCP4Q9UGJ1 667 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 SIX4Q9UIU6 781 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 LTBP2Q14767 1821 aa15.79■□□□□ 0.12
VRK3-212ENST00000596814 ARL5CA6NH57 179 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 ENPP3O14638 875 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 ASS1P00966 412 aaKnown RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 CST3P01034 146 aaPredicted RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 POLR2BP30876 1174 aaKnown RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 NOP14P78316 857 aaKnown RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 RAPGEF1Q13905 1077 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 PPM1KQ8N3J5 372 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 TMEM199Q8N511 208 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 C18orf25Q96B23 403 aaPredicted RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 PPP1R10Q96QC0 940 aaKnown RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 SPAG5Q96R06 1193 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 NAA15Q9BXJ9 866 aaKnown RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 TMEM161AQ9NX61 479 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 PRKAG2Q9UGJ0 569 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 DNAJC12Q9UKB3 198 aa15.78■□□□□ 0.12
VRK3-212ENST00000596814 AJAP1Q9UKB5 411 aaPredicted RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 R3HCC1Q9Y3T6 440 aaKnown RBP15.78■□□□□ 0.12
VRK3-212ENST00000596814 LRRC53A6NM62 1247 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 CYP3A5P20815 502 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 SCNN1GP51170 649 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 MYL6P60660 151 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 RBP5P82980 135 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 SGSM1Q2NKQ1 1148 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 ZNF699Q32M78 642 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 SPOPLQ6IQ16 392 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 PDXDC1Q6P996 788 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 RRAGAQ7L523 313 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 LRRC8AQ8IWT6 810 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 TMEM130Q8N3G9 435 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 GSTCDQ8NEC7 633 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 OR8K1Q8NGG5 319 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 CXorf38Q8TB03 319 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 ELMO3Q96BJ8 720 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 ABHD8Q96I13 439 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 PANX2Q96RD6 677 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 DNAJC7Q99615 494 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 ELAC1Q9H777 363 aaKnown RBP15.77■□□□□ 0.12
VRK3-212ENST00000596814 UBE2TQ9NPD8 197 aaPredicted RBP15.77■□□□□ 0.12
VRK3-212ENST00000596814 SLC38A7Q9NVC3 462 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 PLAGL2Q9UPG8 496 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.77■□□□□ 0.12
VRK3-212ENST00000596814 MKI67P46013 3256 aaKnown RBP15.77■□□□□ 0.12
VRK3-212ENST00000596814 TTC3P53804 2025 aa15.77■□□□□ 0.12
VRK3-212ENST00000596814 THP07101 528 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 CSF2RAP15509 400 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 TSR1Q2NL82 804 aaKnown RBP15.77■□□□□ 0.11
VRK3-212ENST00000596814 COL13A1Q5TAT6 717 aaPredicted RBP15.77■□□□□ 0.11
VRK3-212ENST00000596814 SCARA3Q6AZY7 606 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 GLB1LQ6UWU2 654 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 HELQQ8TDG4 1101 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 TAF4BQ92750 862 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 TATDN2Q93075 761 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 VWCEQ96DN2 955 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 FAM81BQ96LP2 452 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 STK33Q9BYT3 514 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 XYLT2Q9H1B5 865 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 NUCKS1Q9H1E3 243 aaKnown RBP15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms