RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	DCLRE1A	Q6PJP8	1040 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	CD300LG	Q6UXG3	332 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	TAS1R1	Q7RTX1	841 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	TRIML1	Q8N9V2	468 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	BEST2	Q8NFU1	509 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	TMEM174	Q8WUU8	243 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	DDX27	Q96GQ7	796 aa	Known RBP	24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	GPR62	Q9BZJ7	368 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	REV3L	O60673	3130 aa		24.81	■■□□□ 1.56
PNKP-205	ENST00000595081	TRIM49B	A6NDI0	452 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	FSCN2	O14926	492 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	EFEMP2	O95967	443 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	RPL9	P32969	192 aa	Known RBP	24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	TFAM	Q00059	246 aa	Known RBP	24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	STIM1	Q13586	685 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	CEP135	Q66GS9	1140 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	LMBRD2	Q68DH5	695 aa	Predicted RBP	24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	TMC7	Q7Z402	723 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	AUTS2	Q8WXX7	1259 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	PPM1E	Q8WY54	764 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	EEF2KMT	Q96G04	330 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	B3GALT6	Q96L58	329 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	ZBP1	Q9H171	429 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	ATG2A	Q2TAZ0	1938 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	PTPRJ	Q12913	1337 aa		24.8	■■□□□ 1.56
PNKP-205	ENST00000595081	TMEM189-UBE2V1	I3L0A0	370 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	PSMA7	O14818	248 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	PPEF2	O14830	753 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	LRPAP1	P30533	357 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	MYBPC2	Q14324	1141 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	NFIL3	Q16649	462 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	EDRF1	Q3B7T1	1238 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	TIGD5	Q53EQ6	642 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	ANKRD40	Q6AI12	368 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	RNF168	Q8IYW5	571 aa	Predicted RBP	24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	CCDC127	Q96BQ5	260 aa		24.79	■■□□□ 1.56
PNKP-205	ENST00000595081	SF3B1	O75533	1304 aa	Known RBP eCLIP	24.79	■■□□□ 1.56
PNKP-205	ENST00000595081		I3L4J1	428 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	SOD2	P04179	222 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	DLAT	P10515	647 aa	Known RBP	24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	CA8	P35219	290 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	PSMD6	Q15008	389 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	TCEAL5	Q5H9L2	206 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	ADGRD2	Q7Z7M1	963 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	NT5DC4	Q86YG4	428 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	MAFA	Q8NHW3	353 aa	Predicted RBP	24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	DHTKD1	Q96HY7	919 aa	Predicted RBP	24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	MFSD14A	Q96MC6	490 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	POP1	Q99575	1024 aa	Known RBP	24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	TSG101	Q99816	390 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	HERC2P3	Q9BVR0	1158 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	GZF1	Q9H116	711 aa	Predicted RBP	24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	NSUN3	Q9H649	340 aa	Known RBP	24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	DPP3	Q9NY33	737 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	CTNND2	Q9UQB3	1225 aa		24.78	■■□□□ 1.56
PNKP-205	ENST00000595081	COL6A3	P12111	3177 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	HIDE1	A8MVS5	230 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	AKAP3	O75969	853 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	CXCL14	O95715	111 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	CTSA	P10619	480 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	CCNE1	P24864	410 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	RPL13	P26373	211 aa	Known RBP	24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	PPP1R2	P41236	205 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	BRCC3	P46736	316 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	ADAM9	Q13443	819 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	SURF1	Q15526	300 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	C9orf57	Q5W0N0	161 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	OR5B17	Q8NGF7	314 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	PLEKHO2	Q8TD55	490 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	NELFB	Q8WX92	580 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	MTMR12	Q9C0I1	747 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	NGRN	Q9NPE2	291 aa	Known RBP	24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	FRMD4B	Q9Y2L6	1034 aa		24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	24.77	■■□□□ 1.56
PNKP-205	ENST00000595081	C2CD2L	O14523	706 aa		24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	SMC1A	Q14683	1233 aa	Known RBP	24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	FAM171A1	Q5VUB5	890 aa		24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	SCARA3	Q6AZY7	606 aa		24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	PDE12	Q6L8Q7	609 aa	Known RBP	24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	FNBP1	Q96RU3	617 aa		24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	INTS13	Q9NVM9	706 aa		24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	STK39	Q9UEW8	545 aa		24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	NUB1	Q9Y5A7	615 aa		24.76	■■□□□ 1.55
PNKP-205	ENST00000595081	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	ANO9	A1A5B4	782 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	C2orf71	A6NGG8	1288 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	TMEM191B	P0C7N4	346 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	STX17	P56962	302 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	LRRC63	Q05C16	580 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	PTPN14	Q15678	1187 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	RBM23	Q86U06	439 aa	Known RBP	24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	WDR49	Q8IV35	697 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	MRPL43	Q8N983	215 aa	Known RBP	24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	C1orf127	Q8N9H9	656 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	CACTIN	Q8WUQ7	758 aa	Known RBP	24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	CGRRF1	Q99675	332 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	CHST7	Q9NS84	486 aa		24.75	■■□□□ 1.55
PNKP-205	ENST00000595081	PRUNE2	Q8WUY3	3088 aa		24.74	■■□□□ 1.55
PNKP-205	ENST00000595081	PER2	O15055	1255 aa		24.74	■■□□□ 1.55
PNKP-205	ENST00000595081	CETN3	O15182	167 aa		24.74	■■□□□ 1.55

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms