RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 DNA2P51530 1060 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 NNTQ13423 1086 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 NCOA4Q13772 614 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 TMEM132AQ24JP5 1023 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 DUSP28Q4G0W2 176 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 DNAAF5Q86Y56 855 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 PALB2Q86YC2 1186 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 EIF1ADQ8N9N8 165 aaKnown RBP12.07□□□□□ -0.48
LIG3-204ENST00000585740 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIG3-204ENST00000585740 DDX1Q92499 740 aaKnown RBP12.07□□□□□ -0.48
LIG3-204ENST00000585740 ZNF653Q96CK0 615 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 PCDHB18PQ96TA0 734 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 UBXN6Q9BZV1 441 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 KATNBL1Q9H079 304 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 WNT8AQ9H1J5 351 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 OSGEPQ9NPF4 335 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 AVENQ9NQS1 362 aaPredicted RBP12.07□□□□□ -0.48
LIG3-204ENST00000585740 CNTN6Q9UQ52 1028 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 PCDHB4Q9Y5E5 795 aa12.07□□□□□ -0.48
LIG3-204ENST00000585740 GOLGA6L10A0A0M3HER8 536 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 INO80B-WBP1J3KQ70 363 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 ABLIM1O14639 778 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 DDX3YO15523 660 aaKnown RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 ZEB2O60315 1214 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 FAM189A1O60320 539 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 B4GALT4O60513 344 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 EDN1P05305 212 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 MCF2P10911 925 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 HOXD8P13378 290 aaPredicted RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 INSRRP14616 1297 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 EPHB4P54760 987 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 NOP14P78316 857 aaKnown RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 CDC42EP1Q00587 391 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 MBTD1Q05BQ5 628 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 PAK2Q13177 524 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 TRPC3Q13507 836 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 SMC1AQ14683 1233 aaKnown RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 CASP8Q14790 479 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 SGSM1Q2NKQ1 1148 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 ZNF568Q3ZCX4 644 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 LIN9Q5TKA1 542 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 LMBRD2Q68DH5 695 aaPredicted RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 EMBQ6PCB8 327 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 ZBTB33Q86T24 672 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 LINC01465Q8N7H1 131 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 CCDC26Q8TAB7 109 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 ZNF564Q8TBZ8 553 aaPredicted RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 AFG1LQ8WV93 481 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 ANKRD36BP1Q96IX9 119 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 VCPIP1Q96JH7 1222 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 MAML3Q96JK9 1138 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 NLRP4Q96MN2 994 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 TINF2Q9BSI4 451 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 PI4K2AQ9BTU6 479 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 INO80BQ9C086 356 aaPredicted RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 SLITRK6Q9H5Y7 841 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 PTPRHQ9HD43 1115 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.06□□□□□ -0.483e-6■■■■■ 28.8
LIG3-204ENST00000585740 EHD2Q9NZN4 543 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 LCMT1Q9UIC8 334 aa12.06□□□□□ -0.48
LIG3-204ENST00000585740 NOC2LQ9Y3T9 749 aaKnown RBP12.06□□□□□ -0.48
LIG3-204ENST00000585740 RRN3P2A6NIE6 340 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 SNAI1O95863 264 aaPredicted RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 ASS1P00966 412 aaKnown RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 SLC10A3P09131 477 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 HOXC6P09630 235 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 TMEM191BP0C7N4 346 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 UNGP13051 313 aaPredicted RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 ACO1P21399 889 aaKnown RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 CTNNA2P26232 953 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 TNNT3P45378 269 aaPredicted RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 CLCN3P51790 818 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 WNT7BP56706 349 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 MKRN3Q13064 507 aaKnown RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 ACVR2BQ13705 512 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 DGKDQ16760 1214 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 ZBTB41Q5SVQ8 909 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 MAATS1Q7Z4T9 603 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 APBB1IPQ7Z5R6 666 aaPredicted RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 OR6J1Q8NGC5 347 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 OR5B17Q8NGF7 314 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 AENQ8WTP8 325 aaKnown RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 CAVIN3Q969G5 261 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 KRT12Q99456 494 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 NUP85Q9BW27 656 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 PLVAPQ9BX97 442 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 RNPEPQ9H4A4 650 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 RPF1Q9H9Y2 349 aaKnown RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 MED4Q9NPJ6 270 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 GDF3Q9NR23 364 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 SMARCAL1Q9NZC9 954 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 CNOT8Q9UFF9 292 aaKnown RBP12.05□□□□□ -0.48
LIG3-204ENST00000585740 COG5Q9UP83 839 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 ALG6Q9Y672 507 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 PTPRJQ12913 1337 aa12.05□□□□□ -0.48
LIG3-204ENST00000585740 CCDC66A2RUB6 948 aa12.04□□□□□ -0.48
LIG3-204ENST00000585740 MANSC4A6NHS7 340 aaPredicted RBP12.04□□□□□ -0.48
LIG3-204ENST00000585740 H3BRB1 525 aa12.04□□□□□ -0.48
LIG3-204ENST00000585740 KRIT1O00522 736 aa12.04□□□□□ -0.48
LIG3-204ENST00000585740 HEXIM1O94992 359 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms