RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 PRR29P0C7W0 189 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 BRCC3P46736 316 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 RBM25P49756 843 aaKnown RBP14.05□□□□□ -0.16
SS18-219ENST00000581570 CLCNKBP51801 687 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 ROR1Q01973 937 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 PRPF4BQ13523 1007 aaKnown RBP14.05□□□□□ -0.16
SS18-219ENST00000581570 CYP4A22Q5TCH4 519 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 CD300LGQ6UXG3 332 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 CEP68Q76N32 757 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 PIGOQ8TEQ8 1089 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 DEPDC1BQ8WUY9 529 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 SMARCD2Q92925 531 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 ZSWIM3Q96MP5 696 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 CYP4F11Q9HBI6 524 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 GDAQ9Y2T3 454 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 CFAP47Q6ZTR5 3102 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 ATF2P15336 505 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 VIPR2P41587 438 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 CCR2P41597 374 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 ARPP19P56211 112 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 PTGDRQ13258 359 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 TOB2Q14106 344 aaPredicted RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 LRRC32Q14392 662 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 AASDHQ4L235 1098 aaPredicted RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 GLRA4Q5JXX5 417 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 CDCA2Q69YH5 1023 aaPredicted RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 HEATR6Q6AI08 1181 aaKnown RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 SLC8B1Q6J4K2 584 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 MFSD6LQ8IWD5 586 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 TCEAL8Q8IYN2 117 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 FAM160A2Q8N612 972 aaPredicted RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 ZNF274Q96GC6 653 aaPredicted RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 UROC1Q96N76 676 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 PPP1R10Q96QC0 940 aaKnown RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 LARP6Q9BRS8 491 aaKnown RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 C2orf40Q9H1Z8 148 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 PCDHA12Q9UN75 941 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 USP20Q9Y2K6 914 aa14.04□□□□□ -0.16
SS18-219ENST00000581570 MAP1BP46821 2468 aaKnown RBP14.04□□□□□ -0.16
SS18-219ENST00000581570 K7ESF4 209 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 PAPSS2O95340 614 aaPredicted RBP14.03□□□□□ -0.16
SS18-219ENST00000581570 SEC24AO95486 1093 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 PRKCBP05771 671 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 XRCC6P12956 609 aaKnown RBP eCLIP14.03□□□□□ -0.16
SS18-219ENST00000581570 LIG1P18858 919 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 LIMK1P53667 647 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 MLLT6P55198 1093 aaPredicted RBP14.03□□□□□ -0.16
SS18-219ENST00000581570 SHC2P98077 582 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 STK3Q13188 491 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 MAPK6Q16659 721 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 UPP1Q16831 310 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 EARS2Q5JPH6 523 aaKnown RBP14.03□□□□□ -0.16
SS18-219ENST00000581570 EEF1DP3Q658K8 133 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 IQCEQ6IPM2 695 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 SKAP1Q86WV1 359 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 HS6ST3Q8IZP7 471 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 ELMOD1Q8N336 334 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 C3orf58Q8NDZ4 430 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 MCPH1Q8NEM0 835 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 OXER1Q8TDS5 423 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 CSGALNACT1Q8TDX6 532 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 ZNF512Q96ME7 567 aaPredicted RBP14.03□□□□□ -0.16
SS18-219ENST00000581570 GOLGA2P5Q9HBQ8 144 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 RBM12Q9NTZ6 932 aaKnown RBP14.03□□□□□ -0.16
SS18-219ENST00000581570 INSL5Q9Y5Q6 135 aa14.03□□□□□ -0.16
SS18-219ENST00000581570 HEPACAM2A8MVW5 462 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 ACKR2O00590 384 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 TM4SF5O14894 197 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 AXIN1O15169 862 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 MOSPD3O75425 235 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 MYL4P12829 197 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 XBP1P17861 261 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 ATP2B1P20020 1258 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 SF3A2Q15428 464 aaKnown RBP14.02□□□□□ -0.17
SS18-219ENST00000581570 DCAF4L1Q3SXM0 396 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 C1orf228Q6PIY5 440 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 RUFY3Q7L099 469 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 YAF2Q8IY57 180 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 C12orf50Q8NA57 414 aaPredicted RBP14.02□□□□□ -0.17
SS18-219ENST00000581570 ZSCAN18Q8TBC5 510 aaPredicted RBP14.02□□□□□ -0.17
SS18-219ENST00000581570 MSANTD3Q96H12 275 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 C8orf33Q9H7E9 229 aaPredicted RBP14.02□□□□□ -0.17
SS18-219ENST00000581570 TTC12Q9H892 705 aaPredicted RBP14.02□□□□□ -0.17
SS18-219ENST00000581570 TRPV4Q9HBA0 871 aa14.02□□□□□ -0.17
SS18-219ENST00000581570 CACNA1GO43497 2377 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 H7C4K7 107 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 ARNTLO00327 626 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 GJA1P17302 382 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 KPNA1P52294 538 aaPredicted RBP14.01□□□□□ -0.17
SS18-219ENST00000581570 CALCRLQ16602 461 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 DGKKQ5KSL6 1271 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 TPGS2Q68CL5 300 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 Q6ZS52 159 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 WDR5BQ86VZ2 330 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 DEPTORQ8TB45 409 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 BSNDQ8WZ55 320 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 E2F7Q96AV8 911 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 ARRDC1-AS1Q9H2J1 176 aa14.01□□□□□ -0.17
SS18-219ENST00000581570 SH2B1Q9NRF2 756 aaPredicted RBP14.01□□□□□ -0.17
SS18-219ENST00000581570 GJB4Q9NTQ9 266 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms