RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TNNC2P02585 160 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 NFICP08651 508 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 TMEM191BP0C7N4 346 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 TNFAIP3P21580 790 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 EIF4BP23588 611 aaKnown RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 HOXA11P31270 313 aaPredicted RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 CASQ1P31415 396 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 CRYBB1P53674 252 aaPredicted RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 MRPS6P82932 125 aaKnown RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 KIF5AQ12840 1032 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 NCOA4Q13772 614 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 KYAT1Q16773 422 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 TAF2Q6P1X5 1199 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 ENOSF1Q7L5Y1 443 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 APBB1IPQ7Z5R6 666 aaPredicted RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 VPS36Q86VN1 386 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 FAM71AQ8IYT1 594 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 ZNF710Q8N1W2 664 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 TXLNBQ8N3L3 684 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 PCSK9Q8NBP7 692 aaKnown RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 SLC20A1Q8WUM9 679 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 TMEM40Q8WWA1 233 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 ANKRD36BP1Q96IX9 119 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 FAM81BQ96LP2 452 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 AGPAT1Q99943 283 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 SYT11Q9BT88 431 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 TSGA10Q9BZW7 698 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 APOBEC3GQ9HC16 384 aaKnown RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 LUC7LQ9NQ29 371 aaKnown RBP11.32□□□□□ -0.6
SS18-217ENST00000580958 NENFQ9UMX5 172 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 PAXBP1Q9Y5B6 917 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 TRPV2Q9Y5S1 764 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 PTCH2Q9Y6C5 1203 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 GRIN2DO15399 1336 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 UMODL1Q5DID0 1318 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 MROH7Q68CQ1 1323 aa11.32□□□□□ -0.6
SS18-217ENST00000580958 CYP26A1O43174 497 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 SGPL1O95470 568 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 CST3P01034 146 aaPredicted RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 KRT5P13647 590 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 GRM5P41594 1212 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 PRMT2P55345 433 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 MYL6P60660 151 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 NOP14P78316 857 aaKnown RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 POU5F1Q01860 360 aaKnown RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 GCNT1Q02742 428 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 NCBP1Q09161 790 aaKnown RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 TRPC3Q13507 836 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 BMS1Q14692 1282 aaKnown RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 PCBP1Q15365 356 aaKnown RBP eCLIP11.31□□□□□ -0.6
SS18-217ENST00000580958 SLC10A6Q3KNW5 377 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 JADE1Q6IE81 842 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 NOTUMQ6P988 496 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 SLC27A1Q6PCB7 646 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 RNF180Q86T96 592 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 SESTD1Q86VW0 696 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 TMEM130Q8N3G9 435 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 WNT8BQ93098 351 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 ACAP3Q96P50 834 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 ARID3AQ99856 593 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 CCDC94Q9BW85 323 aaPredicted RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 PACSIN1Q9BY11 444 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 EIF2AQ9BY44 585 aaKnown RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 CELF4Q9BZC1 486 aaKnown RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 SNTG2Q9NY99 539 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 MYO1AQ9UBC5 1043 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 NAGPAQ9UK23 515 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 PIN4Q9Y237 131 aaKnown RBP11.31□□□□□ -0.6
SS18-217ENST00000580958 TRIM17Q9Y577 477 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 NUB1Q9Y5A7 615 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 CDY2AQ9Y6F7 541 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 DUSP10Q9Y6W6 482 aa11.31□□□□□ -0.6
SS18-217ENST00000580958 MACROD2A1Z1Q3 448 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 M0QZ92 97 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 ASS1P00966 412 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 CTSHP09668 335 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 CHRNB2P17787 502 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 AXLP30530 894 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 GRK4P32298 578 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 CUL2Q13617 745 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 NAB2Q15742 525 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 C10orf76Q5T2E6 689 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 TAF3Q5VWG9 929 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 ALKBH5Q6P6C2 394 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 NOP9Q86U38 636 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 RSPH3Q86UC2 560 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 SERINC5Q86VE9 423 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 FAM228AQ86W67 206 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 DNAAF5Q86Y56 855 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 GLYCTKQ8IVS8 523 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 RPUSD2Q8IZ73 545 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 SLC30A5Q8TAD4 765 aa11.3□□□□□ -0.6
SS18-217ENST00000580958 SECISBP2LQ93073 1101 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 HMX1Q9NP08 348 aaPredicted RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 SEPT11Q9NVA2 429 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 NOC2LQ9Y3T9 749 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 TDRD15B5MCY1 1934 aaKnown RBP11.3□□□□□ -0.6
SS18-217ENST00000580958 CABYRO75952 493 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 URI1O94763 535 aaPredicted RBP11.29□□□□□ -0.6
SS18-217ENST00000580958 MOCS3O95396 460 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms