RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 C8orf74Q6P047 294 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 CC2D1AQ6P1N0 951 aaPredicted RBP11.91□□□□□ -0.5
SKA2-204ENST00000578519 NT5DC3Q86UY8 548 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 SLC47A2Q86VL8 602 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 IFT20Q8IY31 132 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 KRT222Q8N1A0 295 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 NME8Q8N427 588 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 CCDC26Q8TAB7 109 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 SLC20A1Q8WUM9 679 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 MAIP1Q8WWC4 291 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.91□□□□□ -0.51e-8■■■■■ 101.1
SKA2-204ENST00000578519 ZNF653Q96CK0 615 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 HHIPL1Q96JK4 782 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 RUNDC3BQ96NL0 473 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 ACAP3Q96P50 834 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 FDXACB1Q9BRP7 624 aaPredicted RBP11.91□□□□□ -0.5
SKA2-204ENST00000578519 ZNF518BQ9C0D4 1074 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 NIF3L1Q9GZT8 377 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 THAP2Q9H0W7 228 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 CDT1Q9H211 546 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 ANKZF1Q9H8Y5 726 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 PLEKHA5Q9HAU0 1116 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 NMRK2Q9NPI5 230 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 AVENQ9NQS1 362 aaPredicted RBP11.91□□□□□ -0.5
SKA2-204ENST00000578519 TTC7AQ9ULT0 858 aaPredicted RBP11.91□□□□□ -0.5
SKA2-204ENST00000578519 CNTN6Q9UQ52 1028 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 DERAQ9Y315 318 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 SCINQ9Y6U3 715 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 WDR81Q562E7 1941 aa11.91□□□□□ -0.5
SKA2-204ENST00000578519 ZNFX1Q9P2E3 1918 aaKnown RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 CCDC66A2RUB6 948 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 ZNF185O15231 689 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 XPOTO43592 962 aaKnown RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 NCK2O43639 380 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 VNN1O95497 513 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 LSM8O95777 96 aaKnown RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 ASS1P00966 412 aaKnown RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 MMEP08473 750 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 ZNF286BP0CG31 522 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 CHRNB2P17787 502 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 GNA15P30679 374 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 SLC1A1P43005 524 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 YARSP54577 528 aaKnown RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 FCGRTP55899 365 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 ZNF699Q32M78 642 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 ZNF667Q5HYK9 610 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 LMBRD2Q68DH5 695 aaPredicted RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 MAATS1Q7Z4T9 603 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 SAPCD2Q86UD0 394 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 TLK2Q86UE8 772 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 RBBP8NLQ8NC74 664 aaPredicted RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 COG1Q8WTW3 980 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 KAT5Q92993 513 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 HES6Q96HZ4 224 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.9□□□□□ -0.5
SKA2-204ENST00000578519 PI4K2AQ9BTU6 479 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 HAPLN2Q9GZV7 340 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 CARD9Q9H257 536 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 DOCK5Q9H7D0 1870 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 CYP3A43Q9HB55 503 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 ABCB6Q9NP58 842 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 GNEQ9Y223 722 aaKnown RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 STXBP5LQ9Y2K9 1186 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.9□□□□□ -0.5
SKA2-204ENST00000578519 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.9□□□□□ -0.5
SKA2-204ENST00000578519 TLL2Q9Y6L7 1015 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 PLXNB2O15031 1838 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 ZNF236Q9UL36 1845 aa11.9□□□□□ -0.5
SKA2-204ENST00000578519 IGF2BP3O00425 579 aaKnown RBP eCLIP11.89□□□□□ -0.51
SKA2-204ENST00000578519 ABLIM1O14639 778 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 THAP12O43422 761 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 CA12O43570 354 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 BUB1BO60566 1050 aaPredicted RBP11.89□□□□□ -0.51
SKA2-204ENST00000578519 CALB1P05937 261 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 STAG3L1P0CL83 205 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 CYP2C9P11712 490 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 AKR1A1P14550 325 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 ZSCAN20P17040 1043 aaPredicted RBP11.89□□□□□ -0.51
SKA2-204ENST00000578519 POLR2BP30876 1174 aaKnown RBP11.89□□□□□ -0.51
SKA2-204ENST00000578519 CXCR5P32302 372 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 TM4SF4P48230 202 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 PSEN2P49810 448 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 RBP5P82980 135 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 TAP1Q03518 808 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 C2orf54Q08AI8 447 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 MFSD10Q14728 455 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 LONRF2Q1L5Z9 754 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 GJC2Q5T442 439 aaPredicted RBP11.89□□□□□ -0.51
SKA2-204ENST00000578519 SEL1L2Q5TEA6 688 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 TMEM270Q6UE05 265 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 CATSPER4Q7RTX7 472 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 RSPH3Q86UC2 560 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 RASGEF1CQ8N431 466 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 EIF1ADQ8N9N8 165 aaKnown RBP11.89□□□□□ -0.51
SKA2-204ENST00000578519 USP38Q8NB14 1042 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 NOA1Q8NC60 698 aaKnown RBP11.89□□□□□ -0.51
SKA2-204ENST00000578519 TMEM35BQ8NCS4 154 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 OR5B17Q8NGF7 314 aa11.89□□□□□ -0.51
SKA2-204ENST00000578519 ZNF564Q8TBZ8 553 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms