RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TRABD2BA6NFA1 517 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 WDR64B1ANS9 1081 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 TRDMT1O14717 391 aaKnown RBP18.09■□□□□ 0.49
VPS53-218ENST00000575207 MAFO75444 373 aaPredicted RBP18.09■□□□□ 0.49
VPS53-218ENST00000575207 FGFR3P22607 806 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 ITPKBP27987 946 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 DGKEP52429 567 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 ATXN3P54252 364 aaPredicted RBP18.09■□□□□ 0.49
VPS53-218ENST00000575207 TUSC3Q13454 348 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 UGCGQ16739 394 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 MTERF2Q49AM1 385 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 SRBD1Q8N5C6 995 aaKnown RBP18.09■□□□□ 0.49
VPS53-218ENST00000575207 DAGLBQ8NCG7 672 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 CCDC51Q96ER9 411 aa18.09■□□□□ 0.49
VPS53-218ENST00000575207 KIAA1522Q9P206 1035 aaPredicted RBP18.09■□□□□ 0.49
VPS53-218ENST00000575207 APOBEC2Q9Y235 224 aaKnown RBP18.09■□□□□ 0.49
VPS53-218ENST00000575207 ERICH2A1L162 156 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 PYCARD-AS1I3L0S3 204 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 ABLIM3O94929 683 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 GJA1P17302 382 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 ELF1P32519 619 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 DPP6P42658 865 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 TEAD2Q15562 447 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 PEAR1Q5VY43 1037 aaPredicted RBP18.08■□□□□ 0.48
VPS53-218ENST00000575207 KRT25Q7Z3Z0 450 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 PLEKHM2Q8IWE5 1019 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 TCEAL8Q8IYN2 117 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 HS6ST3Q8IZP7 471 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 FAM181AQ8N9Y4 354 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 CTCFLQ8NI51 663 aaPredicted RBP18.08■□□□□ 0.48
VPS53-218ENST00000575207 CAMK1GQ96NX5 476 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 FCRL3Q96P31 734 aaPredicted RBP18.08■□□□□ 0.48
VPS53-218ENST00000575207 DCBLD2Q96PD2 775 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 DISC1Q9NRI5 854 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 SEPT9Q9UHD8 586 aaPredicted RBP18.08■□□□□ 0.48
VPS53-218ENST00000575207 DOPEY1Q5JWR5 2465 aa18.08■□□□□ 0.48
VPS53-218ENST00000575207 PRRG1O14668 218 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 AXLP30530 894 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 CACNB1Q02641 598 aaPredicted RBP18.07■□□□□ 0.48
VPS53-218ENST00000575207 TNK2Q07912 1038 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 SLC14A1Q13336 389 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 CAMK2BQ13554 666 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 DMC1Q14565 340 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 PTPAQ15257 358 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 ITPRIPL2Q3MIP1 535 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 IQCEQ6IPM2 695 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 GLRX5Q86SX6 157 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 SLCO6A1Q86UG4 719 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 DSCC1Q9BVC3 393 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 DNAAF2Q9NVR5 837 aaKnown RBP18.07■□□□□ 0.48
VPS53-218ENST00000575207 PCDHB9Q9Y5E1 797 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 COL4A3BPQ9Y5P4 624 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 DOPEY2Q9Y3R5 2298 aa18.07■□□□□ 0.48
VPS53-218ENST00000575207 ABCA12Q86UK0 2595 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 SH3BP5O60239 455 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 STBD1O95210 358 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 PLEKHA8P1O95397 391 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 EGFP01133 1207 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 ATF2P15336 505 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 HOXD12P35452 270 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 PLCB2Q00722 1185 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 ROR1Q01973 937 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 SLC8B1Q6J4K2 584 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 NOTUMQ6P988 496 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 RASSF3Q86WH2 238 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 ARID3BQ8IVW6 561 aaPredicted RBP18.06■□□□□ 0.48
VPS53-218ENST00000575207 HACE1Q8IYU2 909 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 MINDY1Q8N5J2 469 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 SHKBP1Q8TBC3 707 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 CRYGNQ8WXF5 182 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 CHFRQ96EP1 664 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 GTPBP2Q9BX10 602 aaKnown RBP18.06■□□□□ 0.48
VPS53-218ENST00000575207 CSRNP2Q9H175 543 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 NXF3Q9H4D5 531 aaKnown RBP18.06■□□□□ 0.48
VPS53-218ENST00000575207 SLITRK6Q9H5Y7 841 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 RIC8AQ9NPQ8 531 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 OBP2AQ9NY56 170 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 SLC6A14Q9UN76 642 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 INSL5Q9Y5Q6 135 aa18.06■□□□□ 0.48
VPS53-218ENST00000575207 CASTOR2A6NHX0 329 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 B8ZZF3 427 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 CYP3A4P08684 503 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 MYL4P12829 197 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 AKAP5P24588 427 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 GNAQP50148 359 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 SETQ01105 290 aaPredicted RBP18.05■□□□□ 0.48
VPS53-218ENST00000575207 AP3B2Q13367 1082 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 PCBP1Q15365 356 aaKnown RBP eCLIP18.05■□□□□ 0.48
VPS53-218ENST00000575207 FBXO43Q4G163 708 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 XKR3Q5GH77 459 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 ZNF512Q96ME7 567 aaPredicted RBP18.05■□□□□ 0.48
VPS53-218ENST00000575207 TPSD1Q9BZJ3 242 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 CAPN10Q9HC96 672 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 PILRBQ9UKJ0 227 aa18.05■□□□□ 0.48
VPS53-218ENST00000575207 TNRC6BQ9UPQ9 1833 aaKnown RBP18.05■□□□□ 0.48
VPS53-218ENST00000575207 TMEM150BA6NC51 233 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 SEC24AO95486 1093 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 PTGER3P43115 390 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 GFPT1Q06210 699 aaPredicted RBP18.04■□□□□ 0.48
VPS53-218ENST00000575207 ANKS3Q6ZW76 656 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms