RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.93■■□□□ 1.1
NUP88-204ENST00000572290 PI4K2BG5E9Z4 385 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 I3L4J1 428 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 TGM5O43548 720 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 WEE2P0C1S8 567 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 CASP5P51878 434 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 ASIC1P78348 528 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 KCNA1Q09470 495 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 POSTNQ15063 836 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 CD302Q8IX05 232 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 HDAC7Q8WUI4 952 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 LEO1Q8WVC0 666 aaPredicted RBP21.92■■□□□ 1.1
NUP88-204ENST00000572290 FAM212AQ96EL1 285 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 SPATA32Q96LK8 384 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 TSPAN18Q96SJ8 248 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 CLSTN3Q9BQT9 956 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 PYM1Q9BRP8 204 aaKnown RBP21.92■■□□□ 1.1
NUP88-204ENST00000572290 FGFBP2Q9BYJ0 223 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 POMKQ9H5K3 350 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 AGO2Q9UKV8 859 aaKnown RBP21.92■■□□□ 1.1
NUP88-204ENST00000572290 NUB1Q9Y5A7 615 aa21.92■■□□□ 1.1
NUP88-204ENST00000572290 TDRD15B5MCY1 1934 aaKnown RBP21.91■■□□□ 1.1
NUP88-204ENST00000572290 XPOTO43592 962 aaKnown RBP21.91■■□□□ 1.1
NUP88-204ENST00000572290 ADRB2P07550 413 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 CYP3A5P20815 502 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 TKTP29401 623 aaKnown RBP21.91■■□□□ 1.1
NUP88-204ENST00000572290 ZBTB6Q15916 424 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 CNNM4Q6P4Q7 775 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 LILRA6Q6PI73 481 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 GPR149Q86SP6 731 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 RNF135Q8IUD6 432 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 SYCP3Q8IZU3 236 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 CMASQ8NFW8 434 aaPredicted RBP21.91■■□□□ 1.1
NUP88-204ENST00000572290 POMGNT1Q8WZA1 660 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 CHAMP1Q96JM3 812 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 C7orf25Q9BPX7 421 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 PLEKHA4Q9H4M7 779 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 KCNH3Q9ULD8 1083 aa21.91■■□□□ 1.1
NUP88-204ENST00000572290 SPATA31D3P0C874 917 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 ALADP13716 330 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 ADSSP30520 456 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 LRPAP1P30533 357 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 ACOT2P49753 483 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 C15orf39Q6ZRI6 1047 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 SPATA31D4Q6ZUB0 917 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 STXBP4Q6ZWJ1 553 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 C1QTNF1Q9BXJ1 281 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 TMEM206Q9H813 350 aa21.9■■□□□ 1.1
NUP88-204ENST00000572290 DCXO43602 365 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 PRPF6O94906 941 aaKnown RBP21.89■■□□□ 1.09
NUP88-204ENST00000572290 ANKS3Q6ZW76 656 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 CEP57L1Q8IYX8 460 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 KREMEN2Q8NCW0 462 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 FEZF2Q8TBJ5 459 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 TSHZ2Q9NRE2 1034 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 MTRRQ9UBK8 725 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 NR2E1Q9Y466 385 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 BACE2Q9Y5Z0 518 aa21.89■■□□□ 1.09
NUP88-204ENST00000572290 CCDC195A0A1B0GUA6 201 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 SYN3O14994 580 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 ADAM12O43184 909 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 SP100P23497 879 aaPredicted RBP21.88■■□□□ 1.09
NUP88-204ENST00000572290 CMA1P23946 247 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 MCM4P33991 863 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 POU5F1Q01860 360 aaKnown RBP21.88■■□□□ 1.09
NUP88-204ENST00000572290 JADE1Q6IE81 842 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 CYP26C1Q6V0L0 522 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 BEST2Q8NFU1 509 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 HPS3Q969F9 1004 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 SUSD3Q96L08 255 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 SCAND2PQ9GZW5 306 aaPredicted RBP21.88■■□□□ 1.09
NUP88-204ENST00000572290 ASB7Q9H672 318 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 SERTAD1Q9UHV2 236 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 DERAQ9Y315 318 aa21.88■■□□□ 1.09
NUP88-204ENST00000572290 MYH15Q9Y2K3 1946 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 RFPL2O75678 378 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 PFKFB1P16118 471 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 GARTP22102 1010 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 OR1D2P34982 312 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 AFMP43652 599 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 GUCY2FP51841 1108 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 RAB33AQ14088 237 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 SPATA1Q5VX52 437 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 CRELD2Q6UXH1 353 aaPredicted RBP21.87■■□□□ 1.09
NUP88-204ENST00000572290 UNC13DQ70J99 1090 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 TMEM130Q8N3G9 435 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 BLZF1Q9H2G9 400 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 ZDHHC7Q9NXF8 308 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 MUTYHQ9UIF7 546 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 FBXW11Q9UKB1 542 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 CDY1Q9Y6F8 540 aa21.87■■□□□ 1.09
NUP88-204ENST00000572290 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.86■■□□□ 1.09
NUP88-204ENST00000572290 A0A1B0GVL5 298 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 LDHAP00338 332 aaKnown RBP21.86■■□□□ 1.09
NUP88-204ENST00000572290 NFICP08651 508 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 SLFN14P0C7P3 912 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 CASP1P29466 404 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 TMEM132DQ14C87 1099 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 FAM26FQ5R3K3 315 aa21.86■■□□□ 1.09
NUP88-204ENST00000572290 VARS2Q5ST30 1063 aaKnown RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms