RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 IGFLR1Q9H665 355 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 STK39Q9UEW8 545 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 DACH1Q9UI36 760 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 DERAQ9Y315 318 aa22.37■■□□□ 1.17
VPS53-210ENST00000571456 GRM6O15303 877 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 GTF2F1P35269 517 aaKnown RBP eCLIP22.36■■□□□ 1.17
VPS53-210ENST00000571456 PPM1AP35813 382 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 PRCPP42785 496 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 CT47A1Q5JQC4 288 aaPredicted RBP22.36■■□□□ 1.17
VPS53-210ENST00000571456 CENPPQ6IPU0 288 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 ASCL5Q7RTU5 278 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 CEP120Q8N960 986 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 MLKLQ8NB16 471 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 ERCC4Q92889 916 aaPredicted RBP22.36■■□□□ 1.17
VPS53-210ENST00000571456 P2RX5Q93086 422 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 CBWD1Q9BRT8 395 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 HSPBP1Q9NZL4 362 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 INPP5FQ9Y2H2 1132 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 PCDHB12Q9Y5F1 795 aa22.36■■□□□ 1.17
VPS53-210ENST00000571456 TTC26A0AVF1 554 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 BICDL2A1A5D9 508 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 ZNF233A6NK53 670 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 H0Y858 1186 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 LINC01565O15544 149 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 OSTNP61366 133 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 ADAM15Q13444 863 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 CBX2Q14781 532 aaPredicted RBP22.35■■□□□ 1.17
VPS53-210ENST00000571456 PAN2Q504Q3 1202 aaKnown RBP22.35■■□□□ 1.17
VPS53-210ENST00000571456 SPOUT1Q5T280 376 aaKnown RBP22.35■■□□□ 1.17
VPS53-210ENST00000571456 GSTCDQ8NEC7 633 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 MSLNLQ96KJ4 702 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 ZFP42Q96MM3 310 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 UROC1Q96N76 676 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 TLR9Q9NR96 1032 aa22.35■■□□□ 1.17
VPS53-210ENST00000571456 MRPL42Q9Y6G3 142 aaKnown RBP22.35■■□□□ 1.17
VPS53-210ENST00000571456 KIAA1671Q9BY89 1806 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 EPG5Q9HCE0 2579 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 TISP43B9A030 160 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 MAPK13O15264 365 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 LETM1O95202 739 aaPredicted RBP22.34■■□□□ 1.17
VPS53-210ENST00000571456 BMPR1AP36894 532 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 ALDH7A1P49419 539 aaKnown RBP22.34■■□□□ 1.17
VPS53-210ENST00000571456 NDUFV1P49821 464 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 GATMP50440 423 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 SCNN1GP51170 649 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 DSC1Q08554 894 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 TUSC3Q13454 348 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 SLC10A6Q3KNW5 377 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 USP37Q86T82 979 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 BRSK2Q8IWQ3 736 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 ASIC4Q96FT7 647 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 ZNF558Q96NG5 402 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 CWH43Q9H720 699 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 DMAC2Q9NW81 257 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 C2CD2Q9Y426 696 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 ANK1P16157 1881 aa22.34■■□□□ 1.17
VPS53-210ENST00000571456 SMIM28A0A1B0GU29 152 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 EXOC3O60645 756 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 POMCP01189 267 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 NR3C1P04150 777 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 ALDH2P05091 517 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 CXCL8P10145 99 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 CYP3A5P20815 502 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 CCNE1P24864 410 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 ACOT2P49753 483 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 NUBP1P53384 320 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 ENPEPQ07075 957 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 ENOX2Q16206 610 aaKnown RBP22.33■■□□□ 1.17
VPS53-210ENST00000571456 ZCWPW2Q504Y3 356 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 FAM213AQ9BRX8 229 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 KLK14Q9P0G3 267 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 MAPK8IP1Q9UQF2 711 aa22.33■■□□□ 1.17
VPS53-210ENST00000571456 ZNF292O60281 2723 aa22.33■■□□□ 1.16
VPS53-210ENST00000571456 PRR23AA6NEV1 266 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 PTGESO14684 152 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 LINC00271P0C7V0 271 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 TNFSF9P41273 254 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 SNRNP35Q16560 246 aaKnown RBP22.32■■□□□ 1.16
VPS53-210ENST00000571456 CRELD2Q6UXH1 353 aaPredicted RBP22.32■■□□□ 1.16
VPS53-210ENST00000571456 LRRC55Q6ZSA7 311 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 SMYD4Q8IYR2 804 aaPredicted RBP22.32■■□□□ 1.16
VPS53-210ENST00000571456 SMRP1Q8NCR6 262 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 DDX27Q96GQ7 796 aaKnown RBP22.32■■□□□ 1.16
VPS53-210ENST00000571456 PPP1R10Q96QC0 940 aaKnown RBP22.32■■□□□ 1.16
VPS53-210ENST00000571456 MKNK1Q9BUB5 465 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 IKZF4Q9H2S9 585 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 PCIF1Q9H4Z3 704 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 NRDE2Q9H7Z3 1164 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 RBAKQ9NYW8 714 aaPredicted RBP22.32■■□□□ 1.16
VPS53-210ENST00000571456 UBQLN1Q9UMX0 589 aaKnown RBP22.32■■□□□ 1.16
VPS53-210ENST00000571456 FRMD4BQ9Y2L6 1034 aa22.32■■□□□ 1.16
VPS53-210ENST00000571456 BIN1O00499 593 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 CLIC2O15247 247 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 PAX3P23760 479 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 NR2F2P24468 414 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 ID4P47928 161 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 NLRP12P59046 1061 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 FKBP3Q00688 224 aaKnown RBP22.31■■□□□ 1.16
VPS53-210ENST00000571456 UBE3AQ05086 875 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 KCNT2Q6UVM3 1135 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 134.2 ms